Auburn University   Biological Sciences

The Santos Lab

Homepage

Research

People

Publications

Journal Covers

Classes

Opportunities

Photo Gallery

 

Protocols

 

PCR Primers

 

Datasets

 

Search Databases

Symbiodinium Cultures

SD2-GED

SymBioSys

Bookmarks

 

SYM DGGE Images

 

CNID-SYM Listserve

 

A-PONDS Listserve

 

Blogs

 

Software & Scripts

 

Web Applications

>>SYM-BLAST

HALO-BLAST

EMBOSS

FaBox

WebLogo

PRIMACLADE

Primers4Clades

CODEHOP

CGView Server

In silico PCR

Calculate Oligo Tm

Microsat Finder

Get Protein Info

Basic Data Stats

IBDWS

MRBAYES WEB FORM

PAUP* WEB FORM

 
   

 

 
   
SYM-BLAST Statistics

As new databases are built for SYM-BLAST on a monthly basis, The Santos Lab keeps track of the growth of each database (measured as number of sequences). This will prove useful for charting trends in sequence submissions, etc. You are welcome to cite these data if you find them useful. NOTE: sharp increases and decreases in the sizes of the databases (i.e., DinoNuc and SymbioNuc) are typically due to the release of sequences from genomic or transcriptomic projects and how NCBI indexes those data. Citation to these data can be attributed to: Santos, S.R. 2016. Chapter 23: From one to many: the population genetics of cnidarian-Symbiodinium symbioses. Invited book chapter in Springer volume "The Cnidaria, past, present and future. The world of Medusa and her sisters" Eds. Goffredo, S. & Dubinsky, Z. pg. 359-373.

 

 

Number of Sequences in Each Database

 

 SymbioNuc

 SymbioAmino

 DinoNuc

 DinoAmino

 July 2017

 508,222

 45,833

 1,625,737

 51,399

 Aug 2017

 508,578

 45,872

 1,618,562

 51,442

 Sept 2017

 508,801

 45,994

 1,626,290

 51,470

 Oct 2017

 508,889

 46,003

 1,626,413

 51,470

 Nov 2017

 509,033

 46,015

 1,626,256

 51,470

 Dec 2017

 509,134

 46,015

 1,625,506

 50,370

 Jan 2018

 509,349

 46,015

 1,626,972

 51,470

 Feb 2018

 509,252

 46,015

 1,627,076

 51,470

 Mar 2018

 508,697

 46,014

 1,627,212

 51,514

 April 2018

 509,341

 46,057

 1,627,128

 51,566

 May 2018

 509,465

 46,061

 1,624,688

 51,595

 June 2018

 508,066

 46,063

 1,622,936

 51,595

 July 2018

 509,623

 46,112

 1,627,213

 50,846

 

Download an Excel file of archived 2005-2018 SYM-BLAST statistics (Updated: 02 July 2018)


Back to faculty and staff