| |
| >> remote_blast_client.prl - Performs various BLAST searches against NCBI's databases. |
| >> blast_parse_all.prl - Parses BLAST reports for all HSPs with BioPerl's Bio::SearchIO module. |
| >> blast_parse_single.prl - Parses BLAST reports for single best HSP with BioPerl's Bio::SearchIO module. |
| >> blast2ps.prl - Creates a graphical representation of BLAST reports as a Postscript file. |
| >> blast2table.prl - Parses BLAST reports using BioPerl's Bio::Tools::Blast.pm; writes the data from each HSP in tabular form in a variety of formats. |
| >> bp_embl2picture.prl - Renders a GenBank or EMBL file into a PNG or GIF image. |
| >> compare_library.prl - Accepts two files (i and j) containing multiple DNA sequences in FASTA format and compares each sequence in file i to that in file j using a local BLAST installation. |
| >> count_types.sh - Counts how many files there are of each type in a directory. |
| >> NCBI_accession_retrieval.sh - Downloads sequences from NCBI in FASTA format when provided with a file containing accession numbers. |
| >> NCBI_condense_names.prl - Replaces entry names in downloaded FASTA sequences from NCBI with simplier names. |
| >> NCBI_retrieval.prl - Uses NCBI's Entrez Programming Utilities to perform interactive batch requests to NCBI Entrez. |
| >> split_fasta.prl - Accepts a file consisting of multiple FASTA formatted sequence records and splits them into multiple files. |
