Articles
in refereed
journals:
55.
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Duin, E.C.,
Wagner, T., Shima, S., Prakash, D., Cronin, B., Yáñez-Ruiz,
D.R., Duval, S., Ruembeli, R., Stemmler, R.T., Thauer, R.K., Kindermann, M.
(2016) Mode of action uncovered for the specific reduction of methane emissions
from ruminants by the small molecule 3-nitrooxypropanol.
PNAS, 113, 6172–6177.
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News items and interviews related to this paper:
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54.
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Subramanian, S., Duin, E.C., Fawcett,
S.E.J., Armstrong, F.A., Meyer, J., Johnson, M.K. (2015) Spectroscopic
and Redox Studies of
Valence-Delocalized [2Fe-2S]+ Centers in Thioredoxin-Like Ferredoxins,
JACS, 137, 4567–4580
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53. |
Prakash, D., Wu, Y., Suh, S.-J., Duin, E.C. (2014)
Elucidating the Process of Activation of Methyl-Coenzyme M
Reductase. J. Bacteriol., 196, 2491-2498 |
52. |
Dhage,
P., Samokhvalov, A., Mckee, M.L., Duin,E.C., Tatarchuk,
B.J. (2013) Reactive adsorption of hydrogen sulfide by promoted
sorbents Cu-ZnO/SiO2: active sites by experiment and
simulation. Surface and Interface Analysis, 45, 865-872 |
51. |
Gencic,
S., Kelly, K., Ghebreamlak, S., Duin, E.C., Grahame, D.A.
(2013) Different Modes of Carbon Monoxide Binding to Acetyl CoA
Synthase and the Role of a Conserved Phenylalanine in the
Coordination Environment of Nickel. Biochemistry, 52,
1705-1716 |
50. |
Lessner, F.H., Jennings, M.E., Hirata, A, Duin, E.C.,
Lessner, D.J. (2012) Subunit D of RNA polymerase from
Methanosarcina acetivorans contains two oxygen-labile
[4Fe-4S] clusters: implications for oxidant-dependent regulation
of transcription. J. Biol. Chem., 287, 18510-18523 |
49. |
Xu,
W., Lees, N.S., Hall, D.*, Welideniya, D., Hoffman, B.M.,
Duin, E.C. (2012) A closer look at the spectroscopic
properties of possible reaction intermediates in WT and mutant
(E)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase (IspH/LytB).
Biochemistry, 51, 4835−4849 |
48. |
Striegler, S., Dittel, M., Kanso, R., Alonso, N.A., Duin, E.C.
(2011) Hydrolysis of glycosides with microgel catalysts.
Inorg. Chem., 50, 8869-8878 |
47. |
Samokhvalov, A., Duin, E.C., Nair, S., Tatarchuk, B.J. (2011)
Adsorption and desorption of dibenzothiophene on Ag-titania
studied by the complementary temperature-programmed XPS and ESR.
Applied Surface Science, 257, 3226-3232 |
46. |
Dhage,
P., Samokhvalov, A., Repala, D., Duin, E.C., Tatarchuk, B.J.
(2011) Regenerable Fe-Mn-ZnO/SiO2 sorbents for room
temperature removal of H2S from fuel reformates:
performance, active sites, Operando studies. Physical
Chemistry Chemical Physics, 13, 2179-2187 |
45. |
Yun,
J.Y., Jambovane, S., Kim, S.-K., Cho, S.-H., Duin, E.C.,
Hong, J.W. (2011) Log-Scale Dose Response of Inhibitors on a
Chip. Anal. Chem., 83, 6148-6153 |
44. |
Sachin Jambovane, Duck Jong Kim, Evert C. Duin,
Se-Kwon Kim, and Jong Wook Hong (2011) Creation of stepwise
concentration gradient in picoliter droplets for parallel
reactions of Matrix Metalloproteinase II and IX. Anal. Chem.,
83, 3358-3364 |
43. |
Dhage, P., Samokhvalov, A., Repala, D., Duin,
E.C., Bowman, M., Tatarchuk, B.J. (2010) Copper-promoted ZnO/SiO2
regenerable sorbents for the room temperature removal of H2S
from reformate gas streams. Ind. Eng. Chem. Res., 49,
8388–8396 |
42. |
Samokhvalov, A., Duin, E.C., Nair, S.,
Bowman, M., Davis, Z., Tatarchuk, B.J. (2010) Study of the
surface chemical reactions of thiophene with Ag/Titania by the
complementary temperature-programmed electron spin resonance,
temperature-programmed desorption, and X-ray photoelectron
spectroscopy: Adsorption, desorption, and sorbent regeneration
mechanisms. J. Phys. Chem. C,
114, 4075–4085 |
41. |
Xu, W., Lees, N.S., Adedeji, D., Wiesner, J.,
Jomaa, H., Hoffman, B.M., Duin, E.C. (2010) Paramagnetic
intermediates of (E)-4-hydroxy-3-methylbut-2-enyl
diphosphate synthase (GcpE/IspG) under steady-state and
pre-steady-state conditions. J. Am. Chem. Soc., 132,
14509-14520 |
40. |
Samokhvalov, A., Duin, E.C., Nair, S.,
Tatarchuk, B.J. (2010)
An
in situ
temperature-programmed XPS study of the surface chemical
reactions of thiophene with Ag/titania.
Surface and Interface Analysis,
42, 1476-1482 |
39. |
Gencic, S., Duin, E.C., Grahame, D.A.
(2010) Tight coupling of partial reactions in the acetyl-CoA
decarbonylase/synthase (ACDS) multienzyme complex from
Methanosarcina thermophila. J.Biol.Chem., 285,
15450-15463 |
38. |
Samokhvalov, A., Nair, S., Duin, E.C.,
Tatarchuk, B.J. (2010) Surface Characterization of Ag/Titania
adsorbents. Appl. Surf. Sci., 256, 3647-3652 |
37. |
Jambovane, S.,Duin, E.C., Kim, S.-K.,
Hong, J.W. (2009) Determination of kinetic parameters, Km
and kcat, with a single experiment on a chip.
Anal. Chem., 81, 3239 - 3245 |
36. |
Rekittke, I., Wiesner, J., Röhrich, R., Demmer,
U., Warkentin, E., Xu, W., Troschke, K., Hintz, M., No, J.H.,
Duin, E.C., Oldfield, E., Jomaa, H., Ermler, U. (2008)
Structure of (E)-4-hydroxy-3-methyl-but-2-enyl
diphosphate reductase, the terminal enzyme of the non-mevalonate
pathway. J. Am. Chem. Soc., 130, 17206-17207 |
35. |
Harmer, J., Finazzo, C., Piskorski, R., Ebner,
S., Duin, E.C., Goenrich, M, Thauer, R.K., Reiher, M.,
Schweiger, A., Hinderberger, D., Jaun, B. (2008) A Nickel
Hydride Complex in the Active Site of Methyl-Coenzyme M
Reductase: Implications for the Catalytic Cycle, J. Am. Chem.
Soc., 130, 10907-10920 |
34. |
Duin, E.C., McKee,
M.L. (2008) A New Mechanism for Methane Production from
Methyl-Coenzyme M Reductase As Derived from Density Functional
Calculations. J. Phys.
Chem. B, 112,
2466-2482. |
33. |
Narayanan, A., Ramamurthy, V., Duin, E.,
Thakur, M. (2008) EPR spectroscopic studies of radical cations
in a novel nonconjugated conductive polymer, poly(β-pinene).
J. Macromol. Sci., Pure Appl. Chem., 45, 195-198 |
32. |
Yang, N., Reiher, M., Wang, M., Harmer, J.,
Duin, E.C. (2007) Formation of a nickel-methyl species in
methyl-coenzyme M reductase, an enzyme catalyzing methane
formation. J. Am. Chem. Soc., 129, 11028-11029 |
31. |
Adedeji, D., Hernandez, H., Wiesner, J., Köhler,
U., Jomaa, H., Duin, E.C. (2007) Possible direct
involvement of the active-site [4Fe-4S] cluster of the GcpE
enzyme from Thermus thermophilus in the conversion of
MEcPP. FEBS Lett., 581, 279-283 |
30. |
Shvareva, T.Y., Beitz, J.V., Duin, E.C.,
Albrecht-Schmitt, T.E. (2005) Polar open-framework structure,
optical properties, and electron paramagnetic resonance of the
mixed-metal uranyl phosphate Cs2[UO2(VO2)2(PO4)2]∙0.59H2O.
Chem. Mater., 17, 6219-6222 |
29. |
Harmer, J., Finazzo, C., Piskorski, R., Bauer,
C., Jaun, B., Duin, E.C., Goenrich, M., Thauer, R.K., van
Doorslaer, S., Schweiger, A. (2005) Spin density and coenzyme M
coordination geometry of the ox1 form of methyl-coenzyme M
reductase: A pulse EPR study. J. Am. Chem. Soc., 127,
17744-17755 |
28. |
Shokes, J.E., Duin, E.C., Bauer, C., Jaun,
B., Hedderich, R., Koch, J., Scott, R.A. (2005) Direct
interaction of coenzyme M with the active-site Fe-S cluster of
heterodisulfide reductase. FEBS Lett., 579, 1741-1744 |
27. |
Goenrich, M., Duin, E.C., Mahlert, F.,
Thauer, R.K. (2005) Temperature dependence of methyl-coenzyme M
reductase (MCR) activity and the formation of the MCR-red2 state
induced by coenzyme B. J. Biol. Inorg. Chem., 10,
333-342 |
26. |
Goenrich, M., Mahlert, F., Duin, E.C.,
Bauer, C., Jaun, B., Thauer, R.K. (2004) Probing the reactivity
of Ni in the active site of methyl-coenzyme M reductase with
substrate analogues. J. Biol. Inorg. Chem., 9, 691-705 |
25. |
Duin, E.C., Signor,
L., Piskorski, R., Mahlert, F., Clay, M.D., Goenrich,
M., Thauer, R.K., Jaun, B., Johnson, M.K. (2004) Spectroscopic
investigation of the nickel-containing porphinoid cofactor F430.
Comparison of the free cofactor in the +1, +2 and +3 oxidation
states with the cofactor bound to methyl coenzyme M reductase in
the silent, red and ox forms. J. Biol. Inorg. Chem., 9,
563-576 |
24. |
Stojanowic, A., Mander, G.J., Duin, E.C.,
Hedderich, R. (2003) Physiological role of the F420-non
reducing hydrogenase (Mvh) from Methanothermobacter
marburgensis. Arch. Microbiol., 180, 194-203 |
23. |
Finazzo, C., Harmer, J., Bauer, C., Jaun, B.,
Duin, E.C., Mahlert, F., Goenrich, M., Thauer, R.K., Van
Doorslaer, S., Schweiger, A. (2003) Coenzyme B induced
coordination of methyl coenzyme M via its thiol group to Ni(I)
of F430 in active methyl-coenzyme M reductase. J.
Am. Chem. Soc., 125, 4988-4989 |
22. |
Finazzo, C., Harmer, J., Jaun, B., Duin, E.C.,
Mahlert, F., Thauer, R.K., Van Doorslaer, S., Schweiger, A.
(2003) Characterization of the MCRred2 form of
Methyl-Coenzyme M reductase, a pulse EPR and ENDOR study. J.
Biol. Inorg. Chem., 8, 586-593 |
21. |
Duin, E.C., Bauer,
C., Jaun, B., Hedderich, R. (2003) Coenzyme M binds to a
[4Fe-4S] cluster in the active site of heterodisulfide reductase
as deduced from EPR studies with the [33S]coenzyme
treated enzyme. FEBS Lett., 538, 81-84 |
20. |
Duin, E.C., Cosper,
N.J., Mahlert, F., Thauer, R.K., Scott, R.A. (2003) Coordination
and geometry of the nickel atom in active methyl-coenzyme M
reductase from Methanothermobacter marburgensis as
detected by X-ray absorption spectroscopy. J. Biol. Inorg.
Chem., 8, 141-148 |
19. |
Altincicek, B., Duin, E.C., Reichenberg,
A., Hedderich, R., Kollas, A.-K., Hintz, M., Wagner, S., Wiesner,
J., Beck, E., Jomaa, H. (2002) LytB protein catalyzes the
terminal step of the 2-C-methyl-D-erythritol-4-phosphate pathway
of isoprenoid biosynthesis. FEBS Lett., 532, 437-440 |
18. |
Kollas, A.-K, Duin, E.C., Eberl, M.,
Altincicek, B., Hintz, M., Reichenberg, A., Henschker, D., Henne,
A., Steinbrecher, I., Ostrovsky, D.N., Hedderich, R., Beck, E.,
Jomaa, H., Wiesner, J. (2002) Functional characterization of
GcpE, an essential enzyme of the non-mevalonate pathway of
isoprenoid biosynthesis. FEBS Lett., 532, 432-436 |
17. |
Mander, G.J., Duin, E.C., Linder, D.,
Stetter, K.O., and Hedderich, R. (2002) Purification and
characterization of a membrane-bound enzyme complex from the
sulfate-reducing archaeon Archaeoglobus fulgidus related
to heterodisulfide reductase from methanogenic archaea. Eur.
J. Biochem., 269, 1895-1904 |
16. |
Mahlert, F., Bauer, C., Jaun, B., Thauer, R.K.,
and Duin, E.C. (2002) The nickel enzyme methyl-coenzyme M
reductase from methanogenic archaea: in vitro induction of the
nickel based MCR-ox EPR signals from MCR-red2. J. Biol. Inorg.
Chem., 7. 500-513 |
15. |
Duin, E.C.,
Madadi-Kahkesh, S., Hedderich, R., Clay, M.D., and Johnson, M.K.
(2002) Heterodisulfide reductase from Methanothermobacter
marburgensis contains an active-site [4Fe-4S] cluster that
is directly involved in mediating heterodisulfide reduction.
FEBS Lett., 512, 263-268 |
14. |
Mahlert, F., Grabarse, W., Kahnt, J., Thauer, R.K.,
and Duin, E.C. (2002) The nickel enzyme methyl-coenzyme M
reductase from methanogenic archaea: in vitro induction of the
nickel based and light sensitive EPR-red2 signal by coenzyme M
plus coenzyme B. J. Biol. Inorg. Chem., 7, 101-112 & 7,
351 |
13. |
Madadi Kahkesh, S., Duin, E.C., Heim, S.,
Albracht, S.P.J., Johnson, M.K., and Hedderich, R. (2001) A
paramagnetic species with unique EPR characteristics in the
active site of heterodisulfide reductase from methanogenic
archaea. Eur. J. Biochem., 268, 2566-2577 |
12. |
Grabarse, W, Mahlert, F., Duin, E.C.,
Goubeaud, M., Shima, S., Thauer, R.K., Lamzin, V., and Ermler,
U. (2001) On the mechanism of biological methane formation:
Structural evidence for conformational changes in
methyl-coenzyme M reductase upon substrate binding. J. Mol.
Biol., 309, 315-330 |
11. |
Wastl, J., Duin, E.C., Iuzzolino, L.,
Dörner, W., Link, T., Hoffmann, S., Sticht, H., Dau, H.,
Lingelbach, K., and Maier, U.-G. (2000) Eukaryotically encoded
and chloroplast-located rubredoxin is associated with
photosystem II. J. Biol. Chem., 275, 30058-30063 |
10. |
Pershad, H.R., Duff, J.L.C., Heering, H.A.,
Duin, E.C., Albracht, S.P.J., and Armstrong, F.A. (1999)
Catalytic electron transport in Chromatium Vinosum [NiFe]-hydrogenase:
Application of voltammetry in detecting redox-active centers and
establishing that hydrogen oxidation is very fast even at
potentials close to the reversible H+/H2
value. Biochemistry, 38, 8992-8999 |
9. |
Golinelli, M.-P., Chatelet,C., Duin, E.C.,
Johnson, M.K., and Meyer, J. (1998) Extensive ligand
rearrangements around the [2Fe-2S] cluster of Clostridium
pasteurianum Ferredoxin. Biochemistry, 37,
10429-10437 |
8. |
Johnson, M.K., Staples, C.R., Duin, E.C.,
Lafferty, M.E., and Duderstadt, R.E. (1998) Novel roles for Fe-S
clusters in stabilizing or generating radical intermediates.
Pure and Applied Chemistry, 70, 939-946.
Abstract |
7. |
Duin, E.C.,
Lafferty, M.E., Crouse, B.R., Allen, R.M., Sanyal, I., Flint,
D.H., and Johnson, M.K. (1997) [2Fe-2S] to [4Fe-4S] cluster
conversion in Escherichia coli biotin synthase.
Biochemistry, 36, 11811-11820 |
6. |
Sorgenfrei, O., Duin, E.C., Klein, A., and
Albracht, S.P.J. (1997) Changes in the electronic structure
around Ni in oxidized and reduced selenium-containing
hydrogenases from Methanococcus voltae. Eur. J.
Biochem., 247, 681-687 |
5. |
Saal, C., Mohanta, S., Nag, K., Dutta, S.K.,
Werner, R., Haase, W., Duin, E., and Johnson, M.K. (1996)
Magnetic investigations on a valence-delocalized dinuclear
Fe(II)-Fe(III) complex. Ber. Bunsenges. Phys. Chem., 100,
2086-2090 |
4. |
Sorgenfrei, O., Duin, E.C., Klein, A., and
Albracht, S.P.J. (1996) Interactions of 77Se and
13CO with nickel in the active site of active F420-nonreducing
hydrogenase from Methanococcus voltae. J. Biol. Chem.,
271, 23799-23806 |
3. |
Bagley, K.A., Duin, E.C., Roseboom, W.,
Albracht, S.P.J., and Woodruff, W.H. (1995) An
infrared-detectable group senses changes in charge density on
the nickel center in hydrogenase from Chromatium vinosum.
Biochemistry, 34, 5527-5535 |
2. |
Bagley, K.A., Van Garderen, C.J., Chen, M.,
Duin, E.C., Albracht, S.P.J., and Woodruff, W.H. (1994)
Infrared studies on the interaction of carbon monoxide with
divalent nickel in hydrogenase from Chromatium vinosum.
Biochemistry, 33, 9229-9236 |
1. |
Surerus, K.K., Chen, M., Van der Zwaan, J.W.,
Rusnak, F.M., Kolk, M., Duin, E.C., Albracht, S.P.J., and
Münck, E. (1994) Further characterization of the spin coupling
observed in oxidized hydrogenase from Chromatium vinosum.
A Mössbauer and multifrequency EPR study. Biochemistry,
33, 4980-4993 |
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