PUBLICATIONS:

Articles in refereed journals:

 

55.

Duin, E.C., Wagner, T., Shima, S., Prakash, D., Cronin, B., Yáñez-Ruiz, D.R., Duval, S., Ruembeli, R., Stemmler, R.T., Thauer, R.K., Kindermann, M. (2016) Mode of action uncovered for the specific reduction of methane emissions from ruminants by the small molecule 3-nitrooxypropanol. PNAS, 113, 6172–6177.

News items and interviews related to this paper:

 

54.

Subramanian, S., Duin, E.C., Fawcett, S.E.J., Armstrong, F.A., Meyer, J., Johnson, M.K. (2015) Spectroscopic  and  Redox Studies of Valence-Delocalized [2Fe-2S]+ Centers in Thioredoxin-Like Ferredoxins, JACS, 137, 4567–4580

53.

Prakash, D., Wu, Y., Suh, S.-J., Duin, E.C. (2014) Elucidating the Process of Activation of Methyl-Coenzyme M Reductase. J. Bacteriol., 196, 2491-2498

52.

Dhage, P., Samokhvalov, A., Mckee, M.L., Duin,E.C., Tatarchuk, B.J. (2013) Reactive adsorption of hydrogen sulfide by promoted sorbents Cu-ZnO/SiO2: active sites by experiment and simulation. Surface and Interface Analysis, 45, 865-872

51.

Gencic, S., Kelly, K., Ghebreamlak, S., Duin, E.C., Grahame, D.A. (2013) Different Modes of Carbon Monoxide Binding to Acetyl CoA Synthase and the Role of a Conserved Phenylalanine in the Coordination Environment of Nickel. Biochemistry, 52, 1705-1716

50.

Lessner, F.H., Jennings, M.E., Hirata, A, Duin, E.C., Lessner, D.J. (2012) Subunit D of RNA polymerase from Methanosarcina acetivorans contains two oxygen-labile [4Fe-4S] clusters: implications for oxidant-dependent regulation of transcription. J. Biol. Chem., 287, 18510-18523

49.

Xu, W., Lees, N.S., Hall, D.*, Welideniya, D., Hoffman, B.M., Duin, E.C. (2012) A closer look at the spectroscopic properties of possible reaction intermediates in WT and mutant (E)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase (IspH/LytB). Biochemistry, 51, 4835−4849

48.

Striegler, S., Dittel, M., Kanso, R., Alonso, N.A., Duin, E.C. (2011) Hydrolysis of glycosides with microgel catalysts. Inorg. Chem., 50, 8869-8878

47.

Samokhvalov, A., Duin, E.C., Nair, S., Tatarchuk, B.J. (2011) Adsorption and desorption of dibenzothiophene on Ag-titania studied by the complementary temperature-programmed XPS and ESR. Applied Surface Science, 257, 3226-3232

46.

Dhage, P., Samokhvalov, A., Repala, D., Duin, E.C., Tatarchuk, B.J. (2011) Regenerable Fe-Mn-ZnO/SiO2 sorbents for room temperature removal of H2S from fuel reformates: performance, active sites, Operando studies. Physical Chemistry Chemical Physics, 13, 2179-2187

45.

Yun, J.Y., Jambovane, S., Kim, S.-K., Cho, S.-H., Duin, E.C., Hong, J.W. (2011) Log-Scale Dose Response of Inhibitors on a Chip. Anal. Chem., 83, 6148-6153

44.

Sachin Jambovane, Duck Jong Kim, Evert C. Duin, Se-Kwon Kim, and Jong Wook Hong (2011) Creation of stepwise concentration gradient in picoliter droplets for parallel reactions of Matrix Metalloproteinase II and IX. Anal. Chem., 83, 3358-3364

43.

Dhage, P., Samokhvalov, A., Repala, D., Duin, E.C., Bowman, M., Tatarchuk, B.J. (2010) Copper-promoted ZnO/SiO2 regenerable sorbents for the room temperature removal of H2S from reformate gas streams. Ind. Eng. Chem. Res., 49, 8388–8396

42.

Samokhvalov, A., Duin, E.C., Nair, S., Bowman, M., Davis, Z., Tatarchuk, B.J. (2010) Study of the surface chemical reactions of thiophene with Ag/Titania by the complementary temperature-programmed electron spin resonance, temperature-programmed desorption, and X-ray photoelectron spectroscopy: Adsorption, desorption, and sorbent regeneration mechanisms. J. Phys. Chem. C, 114, 4075–4085

41.

Xu, W., Lees, N.S., Adedeji, D., Wiesner, J., Jomaa, H., Hoffman, B.M., Duin, E.C. (2010) Paramagnetic intermediates of (E)-4-hydroxy-3-methylbut-2-enyl diphosphate synthase (GcpE/IspG) under steady-state and pre-steady-state conditions. J. Am. Chem. Soc., 132, 14509-14520

40.

Samokhvalov, A., Duin, E.C., Nair, S., Tatarchuk, B.J. (2010) An in situ temperature-programmed XPS study of the surface chemical reactions of thiophene with Ag/titania. Surface and Interface Analysis, 42, 1476-1482

39.

Gencic, S., Duin, E.C., Grahame, D.A. (2010) Tight coupling of partial reactions in the acetyl-CoA decarbonylase/synthase (ACDS) multienzyme complex from Methanosarcina thermophila. J.Biol.Chem., 285, 15450-15463

38.

Samokhvalov, A., Nair, S., Duin, E.C., Tatarchuk, B.J. (2010) Surface Characterization of Ag/Titania adsorbents. Appl. Surf. Sci.,  256, 3647-3652

37.

Jambovane, S.,Duin, E.C., Kim, S.-K., Hong, J.W. (2009) Determination of kinetic parameters, Km and kcat, with a single experiment on a chip. Anal. Chem., 81, 3239 - 3245

36.

Rekittke, I., Wiesner, J., Röhrich, R., Demmer, U., Warkentin, E., Xu, W., Troschke, K., Hintz, M., No, J.H., Duin, E.C., Oldfield, E., Jomaa, H., Ermler, U. (2008) Structure of (E)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase, the terminal enzyme of the non-mevalonate pathway. J. Am. Chem. Soc., 130, 17206-17207

35.

Harmer, J., Finazzo, C., Piskorski, R., Ebner, S., Duin, E.C., Goenrich, M, Thauer, R.K., Reiher, M., Schweiger, A., Hinderberger, D., Jaun, B. (2008) A Nickel Hydride Complex in the Active Site of Methyl-Coenzyme M Reductase: Implications for the Catalytic Cycle, J. Am. Chem. Soc., 130, 10907-10920

34.

Duin, E.C., McKee, M.L. (2008) A New Mechanism for Methane Production from Methyl-Coenzyme M Reductase As Derived from Density Functional Calculations. J. Phys. Chem. B, 112, 2466-2482.

33.

Narayanan, A., Ramamurthy, V., Duin, E., Thakur, M. (2008) EPR spectroscopic studies of radical cations in a novel nonconjugated conductive polymer, poly(β-pinene). J. Macromol. Sci., Pure Appl. Chem., 45, 195-198

32.

Yang, N., Reiher, M., Wang, M., Harmer, J., Duin, E.C. (2007) Formation of a nickel-methyl species in methyl-coenzyme M reductase, an enzyme catalyzing methane formation. J. Am. Chem. Soc., 129, 11028-11029

31.

Adedeji, D., Hernandez, H., Wiesner, J., Köhler, U., Jomaa, H., Duin, E.C. (2007) Possible direct involvement of the active-site [4Fe-4S] cluster of the GcpE enzyme from Thermus thermophilus in the conversion of MEcPP. FEBS Lett., 581, 279-283

30.

Shvareva, T.Y., Beitz, J.V., Duin, E.C., Albrecht-Schmitt, T.E. (2005) Polar open-framework structure, optical properties, and electron paramagnetic resonance of the mixed-metal uranyl phosphate Cs2[UO2(VO2)2(PO4)2]∙0.59H2O. Chem. Mater., 17, 6219-6222

29.

Harmer, J., Finazzo, C., Piskorski, R., Bauer, C., Jaun, B., Duin, E.C., Goenrich, M., Thauer, R.K., van Doorslaer, S., Schweiger, A. (2005) Spin density and coenzyme M coordination geometry of the ox1 form of methyl-coenzyme M reductase: A pulse EPR study. J. Am. Chem. Soc., 127, 17744-17755

28.

Shokes, J.E., Duin, E.C., Bauer, C., Jaun, B., Hedderich, R., Koch, J., Scott, R.A. (2005) Direct interaction of coenzyme M with the active-site Fe-S cluster of heterodisulfide reductase. FEBS Lett., 579, 1741-1744

27.

Goenrich, M., Duin, E.C., Mahlert, F., Thauer, R.K. (2005) Temperature dependence of methyl-coenzyme M reductase (MCR) activity and the formation of the MCR-red2 state induced by coenzyme B. J. Biol. Inorg. Chem., 10, 333-342

26.

Goenrich, M., Mahlert, F., Duin, E.C., Bauer, C., Jaun, B., Thauer, R.K. (2004) Probing the reactivity of Ni in the active site of methyl-coenzyme M reductase with substrate analogues. J. Biol. Inorg. Chem., 9, 691-705

25.

Duin, E.C., Signor, L., Piskorski, R., Mahlert, F., Clay, M.D., Goenrich, M., Thauer, R.K., Jaun, B., Johnson, M.K. (2004) Spectroscopic investigation of the nickel-containing porphinoid cofactor F430. Comparison of the free cofactor in the +1, +2 and +3 oxidation states with the cofactor bound to methyl coenzyme M reductase in the silent, red and ox forms. J. Biol. Inorg. Chem., 9, 563-576

24.

Stojanowic, A., Mander, G.J., Duin, E.C., Hedderich, R. (2003) Physiological role of the F420-non reducing hydrogenase (Mvh) from Methanothermobacter marburgensis. Arch. Microbiol., 180, 194-203

23.

Finazzo, C., Harmer, J., Bauer, C., Jaun, B., Duin, E.C., Mahlert, F., Goenrich, M., Thauer, R.K., Van Doorslaer, S., Schweiger, A. (2003) Coenzyme B induced coordination of methyl coenzyme M via its thiol group to Ni(I) of F430 in active methyl-coenzyme M reductase. J. Am. Chem. Soc., 125, 4988-4989

22.

Finazzo, C., Harmer, J., Jaun, B., Duin, E.C., Mahlert, F., Thauer, R.K., Van Doorslaer, S., Schweiger, A. (2003) Characterization of the MCRred2 form of Methyl-Coenzyme M reductase, a pulse EPR and ENDOR study. J. Biol. Inorg. Chem., 8, 586-593

21.

Duin, E.C., Bauer, C., Jaun, B., Hedderich, R. (2003) Coenzyme M binds to a [4Fe-4S] cluster in the active site of heterodisulfide reductase as deduced from EPR studies with the [33S]coenzyme treated enzyme. FEBS Lett., 538, 81-84

20.

Duin, E.C., Cosper, N.J., Mahlert, F., Thauer, R.K., Scott, R.A. (2003) Coordination and geometry of the nickel atom in active methyl-coenzyme M reductase from Methanothermobacter marburgensis as detected by X-ray absorption spectroscopy. J. Biol. Inorg. Chem., 8, 141-148

19.

Altincicek, B., Duin, E.C., Reichenberg, A., Hedderich, R., Kollas, A.-K., Hintz, M., Wagner, S., Wiesner, J., Beck, E., Jomaa, H. (2002) LytB protein catalyzes the terminal step of the 2-C-methyl-D-erythritol-4-phosphate pathway of isoprenoid biosynthesis. FEBS Lett., 532, 437-440

18.

Kollas, A.-K, Duin, E.C., Eberl, M., Altincicek, B., Hintz, M., Reichenberg, A., Henschker, D., Henne, A., Steinbrecher, I., Ostrovsky, D.N., Hedderich, R., Beck, E., Jomaa, H., Wiesner, J. (2002) Functional characterization of GcpE, an essential enzyme of the non-mevalonate pathway of isoprenoid biosynthesis. FEBS Lett., 532, 432-436

17.

Mander, G.J., Duin, E.C., Linder, D., Stetter, K.O., and Hedderich, R. (2002) Purification and characterization of a membrane-bound enzyme complex from the sulfate-reducing archaeon Archaeoglobus fulgidus related to heterodisulfide reductase from methanogenic archaea. Eur. J. Biochem., 269, 1895-1904

16.

Mahlert, F., Bauer, C., Jaun, B., Thauer, R.K., and Duin, E.C. (2002) The nickel enzyme methyl-coenzyme M reductase from methanogenic archaea: in vitro induction of the nickel based MCR-ox EPR signals from MCR-red2. J. Biol. Inorg. Chem., 7. 500-513

15.

Duin, E.C., Madadi-Kahkesh, S., Hedderich, R., Clay, M.D., and Johnson, M.K. (2002) Heterodisulfide reductase from Methanothermobacter marburgensis contains an active-site [4Fe-4S] cluster that is directly involved in mediating heterodisulfide reduction. FEBS Lett., 512, 263-268

14.

Mahlert, F., Grabarse, W., Kahnt, J., Thauer, R.K., and Duin, E.C. (2002) The nickel enzyme methyl-coenzyme M reductase from methanogenic archaea: in vitro induction of the nickel based and light sensitive EPR-red2 signal by coenzyme M plus coenzyme B. J. Biol. Inorg. Chem., 7, 101-112 & 7, 351

13.

Madadi Kahkesh, S., Duin, E.C., Heim, S., Albracht, S.P.J., Johnson, M.K., and Hedderich, R. (2001) A paramagnetic species with unique EPR characteristics in the active site of heterodisulfide reductase from methanogenic archaea. Eur. J. Biochem., 268, 2566-2577

12.

Grabarse, W, Mahlert, F., Duin, E.C., Goubeaud, M., Shima, S., Thauer, R.K., Lamzin, V., and Ermler, U. (2001) On the mechanism of biological methane formation: Structural evidence for conformational changes in methyl-coenzyme M reductase upon substrate binding. J. Mol. Biol., 309, 315-330

11.

Wastl, J., Duin, E.C., Iuzzolino, L., Dörner, W., Link, T., Hoffmann, S., Sticht, H., Dau, H., Lingelbach, K., and Maier, U.-G. (2000) Eukaryotically encoded and chloroplast-located rubredoxin is associated with photosystem II. J. Biol. Chem., 275, 30058-30063

10.

Pershad, H.R., Duff, J.L.C., Heering, H.A., Duin, E.C., Albracht, S.P.J., and Armstrong, F.A. (1999) Catalytic electron transport in Chromatium Vinosum [NiFe]-hydrogenase: Application of voltammetry in detecting redox-active centers and establishing that hydrogen oxidation is very fast even at potentials close to the reversible H+/H2 value. Biochemistry, 38, 8992-8999

9.

Golinelli, M.-P., Chatelet,C., Duin, E.C., Johnson, M.K., and Meyer, J. (1998) Extensive ligand rearrangements around the [2Fe-2S] cluster of Clostridium pasteurianum Ferredoxin. Biochemistry, 37, 10429-10437

8.

Johnson, M.K., Staples, C.R., Duin, E.C., Lafferty, M.E., and Duderstadt, R.E. (1998) Novel roles for Fe-S clusters in stabilizing or generating radical intermediates. Pure and Applied Chemistry, 70, 939-946. Abstract

7.

Duin, E.C., Lafferty, M.E., Crouse, B.R., Allen, R.M., Sanyal, I., Flint, D.H., and Johnson, M.K. (1997) [2Fe-2S] to [4Fe-4S] cluster conversion in Escherichia coli biotin synthase. Biochemistry, 36, 11811-11820

6.

Sorgenfrei, O., Duin, E.C., Klein, A., and Albracht, S.P.J. (1997) Changes in the electronic structure around Ni in oxidized and reduced selenium-containing hydrogenases from Methanococcus voltae. Eur. J. Biochem., 247, 681-687

5.

Saal, C., Mohanta, S., Nag, K., Dutta, S.K., Werner, R., Haase, W., Duin, E., and Johnson, M.K. (1996) Magnetic investigations on a valence-delocalized dinuclear Fe(II)-Fe(III) complex. Ber. Bunsenges. Phys. Chem., 100, 2086-2090

4.

Sorgenfrei, O., Duin, E.C., Klein, A., and Albracht, S.P.J. (1996) Interactions of 77Se and 13CO with nickel in the active site of active F420-nonreducing hydrogenase from Methanococcus voltae. J. Biol. Chem., 271, 23799-23806

3.

Bagley, K.A., Duin, E.C., Roseboom, W., Albracht, S.P.J., and Woodruff, W.H. (1995) An infrared-detectable group senses changes in charge density on the nickel center in hydrogenase from Chromatium vinosum. Biochemistry, 34, 5527-5535

2.

Bagley, K.A., Van Garderen, C.J., Chen, M., Duin, E.C., Albracht, S.P.J., and Woodruff, W.H. (1994) Infrared studies on the interaction of carbon monoxide with divalent nickel in hydrogenase from Chromatium vinosum. Biochemistry, 33, 9229-9236

1.

Surerus, K.K., Chen, M., Van der Zwaan, J.W., Rusnak, F.M., Kolk, M., Duin, E.C., Albracht, S.P.J., and Münck, E. (1994) Further characterization of the spin coupling observed in oxidized hydrogenase from Chromatium vinosum. A Mössbauer and multifrequency EPR study. Biochemistry, 33, 4980-4993


Book chapters:

 

6.

Duin, E.C. (2012) Methyl-coenzyme M reductase. In: Encyclopedia of Metalloproteins, Springer Editions.

5.

Duin, E.C., Prakash, D., and Brungess, C.* (2011) Methyl-coenzyme M reductase from Methanothermobacter marburgensis. Meth. Enzymol., 494, 159-187

4.

Duin, E.C. (2008) Role of coenzyme F430 in methanogenesis. In: Tetrapyrroles: their birth, life and death, Chapter 23 (Eds. Warren, M.J., Smith, A.), Landes Bioscience, Georgetown, pp 352-374

3.

Grabarse, W., Shima, S., Mahlert, F., Duin, E.C., Thauer, R.K., and Ermler, U. (2001) Methyl-coenzyme M reductase. In: Handbook of Metalloproteins, Volume 2 (Eds. Wieghardt, K., Huber, R., Poulos, T.L., Messerschmidt, A.), John Wiley & Sons, Chichester, pp. 897-914

2.

Johnson, M.K., Duderstadt, R.E., and Duin, E.C. (1999) Biological and synthetic [Fe3S4] clusters. Adv. Inorg. Chem., 47, 1-82

1.

Johnson, M.K., Duin, E.C., Crouse, B.R., Gollinelli, M.-P., and Meyer, J. (1997) Valence-delocalized [Fe2S2]+ clusters. ACS Symposium Series 692, Spectroscopic Methods in Bioinorganic Chemistry, Eds. Solomon, E.I. and Hodgson, K.O., pp. 286-301


Ph.D. thesis:

  1. Duin, E.C. (1996) Exploring the Active Site of Nickel-hydrogenases. University of Amsterdam, Amsterdam, Copy 2000, Enschede, The Netherlands.