PUBLICATIONS:

Articles in refereed journals:

 

49.

Gencic, S., Kelly, K., Ghebreamlak, S., Duin, E.C., Grahame, D.A., Different Modes of Carbon Monoxide Binding to Acetyl CoA Synthase and the Role of a Conserved Phenylalanine in the Coordination Environment of Nickel (2013). Biochemistry, http://pubs.acs.org/doi/pdf/10.1021/bi3016718

48.

Lessner, F.H., Jennings, M.E., Hirata, A, Duin, E.C., Lessner, D.J. (2012) Subunit D of RNA polymerase from Methanosarcina acetivorans contains two oxygen-labile [4Fe-4S] clusters: implications for oxidant-dependent regulation of transcription. J. Biol. Chem., 287, 18510-18523

47.

Xu, W., Lees, N.S., Hall, D.*, Welideniya, D., Hoffman, B.M., Duin, E.C. (2012) A closer look at the spectroscopic properties of possible reaction intermediates in WT and mutant (E)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase (IspH/LytB). Biochemistry, 51, 4835−4849

46.

Striegler, S., Dittel, M., Kanso, R., Alonso, N.A., Duin, E.C. (2011) Hydrolysis of glycosides with microgel catalysts. Inorg. Chem., 50, 8869-8878

45.

Jae Young Yun, Sachin Jambovane, Se-Kwon Kim, Sung-Hak Cho, Evert C. Duin, and Jong Wook Hong (2011) Log-Scale Dose Response of Inhibitors on a Chip. Anal. Chem., 83, 6148-6153

44.

Sachin Jambovane, Duck Jong Kim, Evert C. Duin, Se-Kwon Kim, and Jong Wook Hong (2011) Creation of stepwise concentration gradient in picoliter droplets for parallel reactions of Matrix Metalloproteinase II and IX. Anal. Chem., 83, 3358-3364

43.

Dhage, P., Samokhvalov, A., Repala, D., Duin, E.C., Bowman, M., Tatarchuk, B.J. (2010) Copper-promoted ZnO/SiO2 regenerable sorbents for the room temperature removal of H2S from reformate gas streams. Ind. Eng. Chem. Res., 49, 8388–8396

42.

Samokhvalov, A., Duin, E.C., Nair, S., Bowman, M., Davis, Z., Tatarchuk, B.J. (2010) Study of the surface chemical reactions of thiophene with Ag/Titania by the complementary temperature-programmed electron spin resonance, temperature-programmed desorption, and X-ray photoelectron spectroscopy: Adsorption, desorption, and sorbent regeneration mechanisms. J. Phys. Chem. C, 114, 4075–4085. 

41.

Xu, W., Lees, N.S., Adedeji, D., Wiesner, J., Jomaa, H., Hoffman, B.M., Duin, E.C. (2010) Paramagnetic intermediates of (E)-4-hydroxy-3-methylbut-2-enyl diphosphate synthase (GcpE/IspG) under steady-state and pre-steady-state conditions. J. Am. Chem. Soc., 132, 14509-14520

40.

Samokhvalov, A., Duin, E.C., Nair, S., Tatarchuk, B.J. (2010) An in situ temperature-programmed XPS study of the surface chemical reactions of thiophene with Ag/titania. Surface and Interface Analysis, 42, 1476-1482

39.

Gencic, S., Duin, E.C., Grahame, D.A. (2010) Tight coupling of partial reactions in the acetyl-CoA decarbonylase/synthase (ACDS) multienzyme complex from Methanosarcina thermophila. J.Biol.Chem., 285, 15450-15463

38.

Samokhvalov, A., Nair, S., Duin, E.C., Tatarchuk, B.J. (2010) Surface Characterization of Ag/Titania adsorbents. Appl. Surf. Sci.,  256, 3647-3652

37.

Jambovane, S.,Duin, E.C., Kim, S.-K., Hong, J.W. (2009) Determination of kinetic parameters, Km and kcat, with a single experiment on a chip. Anal. Chem., 81, 3239 - 3245

36.

Rekittke, I., Wiesner, J., Röhrich, R., Demmer, U., Warkentin, E., Xu, W., Troschke, K., Hintz, M., No, J.H., Duin, E.C., Oldfield, E., Jomaa, H., Ermler, U. (2008) Structure of (E)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase, the terminal enzyme of the non-mevalonate pathway. J. Am. Chem. Soc., 130, 17206-17207

35.

Harmer, J., Finazzo, C., Piskorski, R., Ebner, S., Duin, E.C., Goenrich, M, Thauer, R.K., Reiher, M., Schweiger, A., Hinderberger, D., Jaun, B. (2008) A Nickel Hydride Complex in the Active Site of Methyl-Coenzyme M Reductase: Implications for the Catalytic Cycle, J. Am. Chem. Soc., 130, 10907-10920.

34.

Duin, E.C., McKee, M.L. (2008) A New Mechanism for Methane Production from Methyl-Coenzyme M Reductase As Derived from Density Functional Calculations. J. Phys. Chem. B, 112, 2466-2482.

33.

Narayanan, A., Ramamurthy, V., Duin, E., Thakur, M. (2008) EPR spectroscopic studies of radical cations in a novel nonconjugated conductive polymer, poly(β-pinene). J. Macromol. Sci., Pure Appl. Chem., 45, 195-198. Abstract/Full

32.

Yang, N., Reiher, M., Wang, M., Harmer, J., Duin, E.C. (2007) Formation of a nickel-methyl species in methyl-coenzyme M reductase, an enzyme catalyzing methane formation. J. Am. Chem. Soc., 129, 11028-11029. Abstract/Full

31.

Adedeji, D., Hernandez, H., Wiesner, J., Köhler, U., Jomaa, H., Duin, E.C. (2007) Possible direct involvement of the active-site [4Fe-4S] cluster of the GcpE enzyme from Thermus thermophilus in the conversion of MEcPP. FEBS Lett., 581, 279-283. Abstract/Full

30.

Shvareva, T.Y., Beitz, J.V., Duin, E.C., Albrecht-Schmitt, T.E. (2005) Polar open-framework structure, optical properties, and electron paramagnetic resonance of the mixed-metal uranyl phosphate Cs2[UO2(VO2)2(PO4)2]∙0.59H2O. Chem. Mater., 17, 6219-6222. Abstract/Full

29.

Harmer, J., Finazzo, C., Piskorski, R., Bauer, C., Jaun, B., Duin, E.C., Goenrich, M., Thauer, R.K., van Doorslaer, S., Schweiger, A. (2005) Spin density and coenzyme M coordination geometry of the ox1 form of methyl-coenzyme M reductase: A pulse EPR study. J. Am. Chem. Soc., 127, 17744-17755. Abstract/Full

28.

Shokes, J.E., Duin, E.C., Bauer, C., Jaun, B., Hedderich, R., Koch, J., Scott, R.A. (2005) Direct interaction of coenzyme M with the active-site Fe-S cluster of heterodisulfide reductase. FEBS Lett., 579, 1741-1744. Abstract/Full

27.

Goenrich, M., Duin, E.C., Mahlert, F., Thauer, R.K. (2005) Temperature dependence of methyl-coenzyme M reductase (MCR) activity and the formation of the MCR-red2 state induced by coenzyme B. J. Biol. Inorg. Chem., 10, 333-342. Abstract/Full

26.

Goenrich, M., Mahlert, F., Duin, E.C., Bauer, C., Jaun, B., Thauer, R.K. (2004) Probing the reactivity of Ni in the active site of methyl-coenzyme M reductase with substrate analogues. J. Biol. Inorg. Chem., 9, 691-705. Abstract/Full

25.

Duin, E.C., Signor, L., Piskorski, R., Mahlert, F., Clay, M.D., Goenrich, M., Thauer, R.K., Jaun, B., Johnson, M.K. (2004) Spectroscopic investigation of the nickel-containing porphinoid cofactor F430. Comparison of the free cofactor in the +1, +2 and +3 oxidation states with the cofactor bound to methyl coenzyme M reductase in the silent, red and ox forms. J. Biol. Inorg. Chem., 9, 563-576. Abstract/Full

24.

Stojanowic, A., Mander, G.J., Duin, E.C., Hedderich, R. (2003) Physiological role of the F420-non reducing hydrogenase (Mvh) from Methanothermobacter marburgensis. Arch. Microbiol., 180, 194-203. Abstract/Full

23.

Finazzo, C., Harmer, J., Bauer, C., Jaun, B., Duin, E.C., Mahlert, F., Goenrich, M., Thauer, R.K., Van Doorslaer, S., Schweiger, A. (2003) Coenzyme B induced coordination of methyl coenzyme M via its thiol group to Ni(I) of F430 in active methyl-coenzyme M reductase. J. Am. Chem. Soc., 125, 4988-4989. Abstract/Full

22.

Finazzo, C., Harmer, J., Jaun, B., Duin, E.C., Mahlert, F., Thauer, R.K., Van Doorslaer, S., Schweiger, A. (2003) Characterization of the MCRred2 form of Methyl-Coenzyme M reductase, a pulse EPR and ENDOR study. J. Biol. Inorg. Chem., 8, 586-593. Abstract/Full

21.

Duin, E.C., Bauer, C., Jaun, B., Hedderich, R. (2003) Coenzyme M binds to a [4Fe-4S] cluster in the active site of heterodisulfide reductase as deduced from EPR studies with the [33S]coenzyme treated enzyme. FEBS Lett., 538, 81-84. Abstract/Full

20.

Duin, E.C., Cosper, N.J., Mahlert, F., Thauer, R.K., Scott, R.A. (2003) Coordination and geometry of the nickel atom in active methyl-coenzyme M reductase from Methanothermobacter marburgensis as detected by X-ray absorption spectroscopy. J. Biol. Inorg. Chem., 8, 141-148. Abstract/Full

19.

Altincicek, B., Duin, E.C., Reichenberg, A., Hedderich, R., Kollas, A.-K., Hintz, M., Wagner, S., Wiesner, J., Beck, E., Jomaa, H. (2002) LytB protein catalyzes the terminal step of the 2-C-methyl-D-erythritol-4-phosphate pathway of isoprenoid biosynthesis. FEBS Lett., 532, 437-440. Abstract/Full

18.

Kollas, A.-K, Duin, E.C., Eberl, M., Altincicek, B., Hintz, M., Reichenberg, A., Henschker, D., Henne, A., Steinbrecher, I., Ostrovsky, D.N., Hedderich, R., Beck, E., Jomaa, H., Wiesner, J. (2002) Functional characterization of GcpE, an essential enzyme of the non-mevalonate pathway of isoprenoid biosynthesis. FEBS Lett., 532, 432-436. Abstract/Full

17.

Mander, G.J., Duin, E.C., Linder, D., Stetter, K.O., and Hedderich, R. (2002) Purification and characterization of a membrane-bound enzyme complex from the sulfate-reducing archaeon Archaeoglobus fulgidus related to heterodisulfide reductase from methanogenic archaea. Eur. J. Biochem., 269, 1895-1904. Abstract/Full

16.

Mahlert, F., Bauer, C., Jaun, B., Thauer, R.K., and Duin, E.C. (2002) The nickel enzyme methyl-coenzyme M reductase from methanogenic archaea: in vitro induction of the nickel based MCR-ox EPR signals from MCR-red2. J. Biol. Inorg. Chem., 7. 500-513. Abstract/Full

15.

Duin, E.C., Madadi-Kahkesh, S., Hedderich, R., Clay, M.D., and Johnson, M.K. (2002) Heterodisulfide reductase from Methanothermobacter marburgensis contains an active-site [4Fe-4S] cluster that is directly involved in mediating heterodisulfide reduction. FEBS Lett., 512, 263-268. Abstract/Full

14.

Mahlert, F., Grabarse, W., Kahnt, J., Thauer, R.K., and Duin, E.C. (2002) The nickel enzyme methyl-coenzyme M reductase from methanogenic archaea: in vitro induction of the nickel based and light sensitive EPR-red2 signal by coenzyme M plus coenzyme B. J. Biol. Inorg. Chem., 7, 101-112 & 7, 351. Abstract/Full

13.

Madadi Kahkesh, S., Duin, E.C., Heim, S., Albracht, S.P.J., Johnson, M.K., and Hedderich, R. (2001) A paramagnetic species with unique EPR characteristics in the active site of heterodisulfide reductase from methanogenic archaea. Eur. J. Biochem., 268, 2566-2577. Abstract/Full

12.

Grabarse, W, Mahlert, F., Duin, E.C., Goubeaud, M., Shima, S., Thauer, R.K., Lamzin, V., and Ermler, U. (2001) On the mechanism of biological methane formation: Structural evidence for conformational changes in methyl-coenzyme M reductase upon substrate binding. J. Mol. Biol., 309, 315-330. Abstract/Full

11.

Wastl, J., Duin, E.C., Iuzzolino, L., Dörner, W., Link, T., Hoffmann, S., Sticht, H., Dau, H., Lingelbach, K., and Maier, U.-G. (2000) Eukaryotically encoded and chloroplast-located rubredoxin is associated with photosystem II. J. Biol. Chem., 275, 30058-30063. Abstract/Full

10.

Pershad, H.R., Duff, J.L.C., Heering, H.A., Duin, E.C., Albracht, S.P.J., and Armstrong, F.A. (1999) Catalytic electron transport in Chromatium Vinosum [NiFe]-hydrogenase: Application of voltammetry in detecting redox-active centers and establishing that hydrogen oxidation is very fast even at potentials close to the reversible H+/H2 value. Biochemistry, 38, 8992-8999. Abstract/Full

9.

Golinelli, M.-P., Chatelet,C., Duin, E.C., Johnson, M.K., and Meyer, J. (1998) Extensive ligand rearrangements around the [2Fe-2S] cluster of Clostridium pasteurianum Ferredoxin. Biochemistry, 37, 10429-10437. Abstract/Full

8.

Johnson, M.K., Staples, C.R., Duin, E.C., Lafferty, M.E., and Duderstadt, R.E. (1998) Novel roles for Fe-S clusters in stabilizing or generating radical intermediates. Pure and Applied Chemistry, 70, 939-946. Abstract

7.

Duin, E.C., Lafferty, M.E., Crouse, B.R., Allen, R.M., Sanyal, I., Flint, D.H., and Johnson, M.K. (1997) [2Fe-2S] to [4Fe-4S] cluster conversion in Escherichia coli biotin synthase. Biochemistry, 36, 11811-11820. Abstract/Full

6.

Sorgenfrei, O., Duin, E.C., Klein, A., and Albracht, S.P.J. (1997) Changes in the electronic structure around Ni in oxidized and reduced selenium-containing hydrogenases from Methanococcus voltae. Eur. J. Biochem., 247, 681-687. Abstract/Full

5.

Saal, C., Mohanta, S., Nag, K., Dutta, S.K., Werner, R., Haase, W., Duin, E., and Johnson, M.K. (1996) Magnetic investigations on a valence-delocalized dinuclear Fe(II)-Fe(III) complex. Ber. Bunsenges. Phys. Chem., 100, 2086-2090. Abstract

4.

Sorgenfrei, O., Duin, E.C., Klein, A., and Albracht, S.P.J. (1996) Interactions of 77Se and 13CO with nickel in the active site of active F420-nonreducing hydrogenase from Methanococcus voltae. J. Biol. Chem., 271, 23799-23806. Abstract/Full

3.

Bagley, K.A., Duin, E.C., Roseboom, W., Albracht, S.P.J., and Woodruff, W.H. (1995) An infrared-detectable group senses changes in charge density on the nickel center in hydrogenase from Chromatium vinosum. Biochemistry, 34, 5527-5535. Abstract - PDF (Full)

2.

Bagley, K.A., Van Garderen, C.J., Chen, M., Duin, E.C., Albracht, S.P.J., and Woodruff, W.H. (1994) Infrared studies on the interaction of carbon monoxide with divalent nickel in hydrogenase from Chromatium vinosum. Biochemistry, 33, 9229-9236. Abstract - PDF (Full)

1.

Surerus, K.K., Chen, M., Van der Zwaan, J.W., Rusnak, F.M., Kolk, M., Duin, E.C., Albracht, S.P.J., and Münck, E. (1994) Further characterization of the spin coupling observed in oxidized hydrogenase from Chromatium vinosum. A Mössbauer and multifrequency EPR study. Biochemistry, 33, 4980-4993. Abstract - PDF (Full)


Book chapters:

 

6.

Duin, E.C. (2012) Methyl-coenzyme M reductase. In: Encyclopedia of Metalloproteins, Springer Editions, http://www.springerreference.com/docs/html/chapterdbid/309397.html

5.

Duin, E.C., Prakash, D., and Brungess, C.* (2011) Methyl-coenzyme M reductase from Methanothermobacter marburgensis. Meth. Enzymol., 494, 159-187

4.

Duin, E.C. (2008) Role of coenzyme F430 in methanogenesis. In: Tetrapyrroles: their birth, life and death, Chapter 23 (Eds. Warren, M.J., Smith, A.), Landes Bioscience, Georgetown, pp 352-374

3.

Grabarse, W., Shima, S., Mahlert, F., Duin, E.C., Thauer, R.K., and Ermler, U. (2001) Methyl-coenzyme M reductase. In: Handbook of Metalloproteins, Volume 2 (Eds. Wieghardt, K., Huber, R., Poulos, T.L., Messerschmidt, A.), John Wiley & Sons, Chichester, pp. 897-914

2.

Johnson, M.K., Duderstadt, R.E., and Duin, E.C. (1999) Biological and synthetic [Fe3S4] clusters. Adv. Inorg. Chem., 47, 1-82

1.

Johnson, M.K., Duin, E.C., Crouse, B.R., Gollinelli, M.-P., and Meyer, J. (1997) Valence-delocalized [Fe2S2]+ clusters. ACS Symposium Series 692, Spectroscopic Methods in Bioinorganic Chemistry, Eds. Solomon, E.I. and Hodgson, K.O., pp. 286-301


Ph.D. thesis:

  1. Duin, E.C. (1996) Exploring the active site of nickel-hydrogenases. University of Amsterdam, Amsterdam, Copy 2000, Enschede, The Netherlands.