Struck, T.H., A. Golombek, A.Weiger, F. A.Franke, W. Westheide, G. Purschke, C. Bleidorn, K. M. Halanych. 2015. The evolution of annelids reveals two adaptive routes to the interstitial realm.Current Biology 25: 1993-1999.

Brannock, P. M., and K. M. Halanych. 2015. Meiofaunal community analysis by high-throughput sequencing: Comparison of extraction, quality filtering, and clustering methods. Marine Genomics.23: 67-75.

Whelan, N. V., K. M. Kocot, L. L. Moroz, K. M. Halanych. 2015. Error, signal, and the placement of Ctenophora sister to all other animals. Proceedings of the National Academy of Sciences. 112: 5773-5778. www.pnas.org/cgi/doi/10.1073/pnas.1503453112.

Halanych, K.M. 2015. The ctenophore lineage is older then sponges? That cannot be right! Or can it? Journal of Experimental Biology 218: 592-597. doi:10.1242/jeb.111872.

Cannon, J.T., K. M. Kocot, D. S. Waits, D. A. Weese, B. J. Swalla, S. R. Santos, and K. M. Halanych. 2014. Phylogenomic resolution of the hemichordate and echinoderm clade. Current Biology 24: 2827-2832.

Halanych, K.M., and K.M. Kocot. 2014. Repurposed transcriptomic data facilitate discovery of innate immunity Toll-Like Receptor (TLRs) genes across Lophotrochozoa. Biological Bulletin 227: 201-209.

Moroz, L.L, K. M. Kocot, M. R. Citarella, S. Dosung, T. P. Norekian, I. S. Povolotskaya, A. P. Grigorenko, C. Dailey, E. Berezikov, K. Buckley, D. Reshetov, A. Ptytsyn, K. Mukherjee, T. P. Moroz, E. Dabe, F. Yu, V. V. Kapitonov, J. Jurka, Y. Bobkov, J. J. Swore, D. O. Girardo, R. Bruders, C. E. Mills, V. V. Solovyev, J. Rast, B. J. Swalla, F. A. Kondrashov, J. V. Sweedler, E. I. Rogaev, K. M. Halanych, A. B. Kohn. 2014. The Ctenophore Genome and the Emergence of Neural Systems.Nature. 510: 109-114.