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RECENT PUBLICATIONS

Liu, S., Li, Y., Qin, Z., Geng, X., Bao, L., Kaltenboeck, L., Kucuktas, H., Dunham, R., and Liu, Z. (2015). High-density interspecific genetic linkage mapping provides insights into genomic incompatibility between channel catfish and blue catfish. Animal Genetics, doi: 10.1111/age.12372.

Geng, X., Sha, J., Liu, S. K., Bao, L. S., Zhang, J. R., Wang, R. J., Yao, J., Li, C., Feng, J. B., Sun, F. Y., Sun, L. Y., Jiang, C., Zhang, Y., Chen, A. L., Dunham, R., Zhi, D. G., and Liu, Z. J. (2015). A genome-wide association study in catfish reveals the presence of functional hubs of related genes within QTLs for columnaris disease resistance. BMC Genomics 16.

Yao, J., Mu, W. J., Liu, S. K., Zhang, J. R., Wen, H. S., and Liu, Z. J. (2015). Identification, phylogeny and expression analysis of suppressors of cytokine signaling in channel catfish. Molecular Immunology 64, 276-284.

Jiang, C., Zhang, J. R., Yao, J., Liu, S. K., Li, Y., Song, L., Li, C., Wang, X. Z., and Liu, Z. J. (2015). Complement regulatory protein genes in channel catfish and their involvement in disease defense response. Developmental and Comparative Immunology 53, 33-41.

Feng, J. B., Liu, S. K., Wang, R. J., Zhang, J. R., Wang, X. L., Kaltenboeck, L., Li, J. L., and Liu, Z. J. (2015). Molecular characterization, phylogenetic analysis and expression profiling of myoglobin and cytoglobin genes in response to heat stress in channel catfish Ictalurus punctatus. Journal of Fish Biology 86, 592-604.

Mu, W. J., Yao, J., Zhang, J. R., Liu, S. K., Wen, H. S., Feng, J. B., and Liu, Z. J. (2015). Expression of tumor suppressor genes in channel catfish after bacterial infections. Developmental and Comparative Immunology 48, 171-177.

Tian, Y., Yao, J., Liu, S. K., Jiang, C., Zhang, J. R., Li, Y., Feng, J. B., and Liu, Z. J. (2015). Identification and expression analysis of 26 oncogenes of the receptor tyrosine kinase family in channel catfish after bacterial infection and hypoxic stress. Comparative Biochemistry and Physiology D-Genomics & Proteomics 14, 16-25.

Sun, L. Y., Liu, S. K., Bao, L. S., Li, Y., Feng, J. B., and Liu, Z. J. (2015). Claudin multigene family in channel catfish and their expression profiles in response to bacterial infection and hypoxia as revealed by meta-analysis of RNA-Seq datasets. Comparative Biochemistry and Physiology D-Genomics & Proteomics 13, 60-69.

Feng, J. B., Liu, S. K., Wang, X. L., Wang, R. J., Zhang, J. R., Jiang, Y. L., Li, C., Kaltenboeck, L., Li, J. L., and Liu, Z. J. (2014). Channel catfish hemoglobin genes: Identification, phylogenetic and syntenic analysis, and specific induction in response to heat stress. Comparative Biochemistry and Physiology D-Genomics & Proteomics 9, 11-22.

Geng, X., Feng, J. B., Liu, S. K., Wang, Y. P., Arias, C., and Liu, Z. J. (2014). Transcriptional regulation of hypoxia inducible factors alpha (HIF-alpha) and their inhibiting factor (FIH-1) of channel catfish (Ictalurus punctatus) under hypoxia. Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology 169, 38-50.

Hutson, A. M., Liu, Z., Kucuktas, H., Umali-Maceina, G., Su, B., and Dunham, R. A. (2014). Quantitative trait loci map for growth and morphometric traits using a channel catfish x blue catfish interspecific hybrid system. Journal of Animal Science 92, 1850-1865.

Wang, R. J., Zhang, Y., Liu, S. K., Li, C., Sun, L. Y., Bao, L. S., Feng, J. B., and Liu, Z. J. (2014). Analysis of 52 Rab GTPases from channel catfish and their involvement in immune responses after bacterial infections. Developmental and Comparative Immunology 45, 21-34.

Wong, L. L., Peatman, E., Kelly, L., Kucuktas, H., Na-Nakorn, U., and Liu, Z. J. (2014). Catfish Species Identification Using Lab-On-Chip PCR-RFLP. Journal of Aquatic Food Product Technology 23, 2-13.

Xu, P., Zhang, X. F., Wang, X. M., Li, J. T., Liu, G. M., Kuang, Y. Y., Xu, J., Zheng, X. H., Ren, L. F., Wang, G. L., Zhang, Y., Huo, L. H., Zhao, Z. X., Cao, D. C., Lu, C. Y., Li, C., Zhou, Y., Liu, Z. J., Fan, Z. H., Shan, G. L., Li, X. G., Wu, S. X., Song, L. P., Hou, G. Y., Jiang, Y. L., Jeney, Z., Yu, D., Wang, L., Shao, C. J., Song, L., Sun, J., Ji, P. F., Wang, J., Li, Q., Xu, L. M., Sun, F. Y., Feng, J. X., Wang, C. H., Wang, S. L., Wang, B. S., Li, Y., Zhu, Y. P., Xue, W., Zhao, L., Wang, J. T., Gu, Y., Lv, W. H., Wu, K. J., Xiao, J. F., Wu, J. Y., Zhang, Z., Yu, J., and Sun, X. W. (2014). Genome sequence and genetic diversity of the common carp, Cyprinus carpio. Nature Genetics 46, 1212-1219.

Yao, J., Li, C., Zhang, J. R., Liu, S. K., Feng, J. B., Wang, R. J., Li, Y., Jiang, C., Song, L., Chen, A. L., and Liu, Z. J. (2014). Expression of nitric oxide synthase (NOS) genes in channel catfish is highly regulated and time dependent after bacterial challenges. Developmental and Comparative Immunology 45, 74-86.

Cui, J., Liu, S. K., Zhang, B., Wang, H. D., Sun, H. J., Song, S. H., Qiu, X. M., Liu, Y., Wang, X. L., Jiang, Z. Q., and Liu, Z. J. (2014). Transciptome Analysis of the Gill and Swimbladder of Takifugu rubripes by RNA-Seq. Plos One 9.

Jiang, Y. L., Gao, X. Y., Liu, S. K., Zhang, Y., Liu, H., Sun, F. Y., Bao, L. S., Waldbieser, G., and Liu, Z. J. (2013). Whole genome comparative analysis of channel catfish (Ictalurus punctatus) with four model fish species. BMC Genomics 14.

Sahu, D. K., Panda, S. P., Panda, S., Das, P., Meher, P. K., Hazra, R. K., Peatman, E., Liu, Z. J. J., Eknath, A. E., and Nandi, S. (2013). Identification of reproduction-related genes and SSR-markers through expressed sequence tags analysis of a monsoon breeding carp rohu, Labeo rohita (Hamilton). Gene 524, 1-14.

Wang, R. J., Sun, L. Y., Bao, L. S., Zhang, J. R., Jiang, Y. L., Yao, J., Song, L., Feng, J. B., Liu, S. K., and Liu, Z. J. (2013). Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish. BMC Genomics 14.

Liu, S. K., Wang, X. L., Sun, F. Y., Zhang, J. R., Feng, J. B., Liu, H., Rajendran, K. V., Sun, L. Y., Zhang, Y., Jiang, Y. L., Peatman, E., Kaltenboeck, L., Kucuktas, H., and Liu, Z. J. (2013). RNA-Seq reveals expression signatures of genes involved in oxygen transport, protein synthesis, folding, and degradation in response to heat stress in catfish. Physiological Genomics 45, 462-476.

Zhang, Y., Liu, S. K., Lu, J. G., Jiang, Y. L., Gao, X. Y., Ninwichian, P., Li, C., Waldbieser, G., and Liu, Z. J. (2013). Comparative genomic analysis of catfish linkage group 8 reveals two homologous chromosomes in zebrafish and other teleosts with extensive inter-chromosomal rearrangements. BMC Genomics 14.

Liu S, Zhang Y, Zhou Z, Waldbieser G, Sun F, Lu J, Zhang J, Jiang Y, Zhang H, Wang X, Rajendran KV, Kucuktas H, Peatman E, Liu ZJ. (2013). Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. BMC Genomics, 14:1.

Abernathy, J., Xu, D. H., Peatman, E., Kucuktas, H., Klesius, P., and Liu, Z. J. (2011). Gene expression profiling of a fish parasite Ichthyophthirius multifiliis: Insights into development and senescence-associated avirulence. Comparative Biochemistry and Physiology D-Genomics & Proteomics 6, 382-392.

Zhang J, Liu S, K.V. Rajendran, Sun L, Zhang Y, Sun F, Kucuktas H, Liu H, and Z Liu (2013) Pathogen recognition receptors in channel catfish: III Phylogeny and expression analysis of Toll-like receptors. Developmental & Comparative Immunology, Volume 40, 185-194.

Liu S, Li Q, Liu Z (2013) Genome-Wide Identification, Characterization and Phylogenetic Analysis of 50 Catfish ATP-Binding Cassette (ABC) Transporter Genes. PLoS ONE 8(5): e63895. doi:10.1371/journal.pone.0063895

Preziosa E, Liu S, Terova G, Gao X, Liu H, Kucuktas H, Terhune J, and Liu ZJ. (2013). Effect of Nutrient Restriction and Re-feeding on Calpain Family Genes in Skeletal Muscle of Channel Catfish (Ictalurus punctatus). PLoS One, PLoS ONE 8(3): e59404. doi:10.1371/journal.pone.0059404.

 

 

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