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| CLICK HERE FOR FULL LIST OF PUBLICATIONS | |
| RECENT PUBLICATIONS | |
Liu ZJ, Li RW, Waldbieser G. (2008) Utilization of microarray technology for functional genomics in ictalurid catfish.Journal of Fish Biology, in press.
Rise M, Liu ZJ, Douglas SE, Brown LL, Nash JHE, and McFall-Ngai MJ. (2008) Aquaculture-related Applications of DNA Microarray Technology. In: Molecular Research in Aquaculture (eds., Overturf and Small). Blackwell Publishing, Ames, IA, in press.
He C., Ge L, Zhou Z, X Mu Y, Liu W, Gao X, and Liu ZJ. (2008) Sequence and organization of the complete mitochondrial genome of spotted halibut (Verasper variegatus) and barfin flounder (Verasper moseri). DNA Sequence, 19:246-255.
Liu ZJ. (2008) Chapter 3, Catfish. Pp. 85-100. In “The Genome: A Series on Genome Mapping, Molecular Breeding & Genomics of Economic Species” (C. Kole, Kocher eds.) Vol. 6, Oxford & IBH and Science Pub. Inc.
Peatman E, Terhune J, Baoprasertkul P, Xu P, Nandi S, Wang S, Somridhivej B, Kucuktas H, Li P, Dunham R, Liu ZJ. (2008) Microarray analysis of gene expression in the blue catfish liver reveals early activation of the MHC class I pathway after infection with Edwardsiella ictaluri. Molecular Immunology 45: 553-566.
Sha Z, Xu P, Takano T, Liu H, Terhune J, Liu ZJ. (2008) The warm temperature acclimation protein Wap65 as an immune response gene: Its duplicates are differentially regulated by temperature and bacterial infections. Molecular Immunology 45: 1458-1469.
Somridhivej B, Wang S., Sha Z., Liu H., Quilang J., Xu P, Li P, Liu ZJ (2008) Characterization, polymorphism assessment, and database construction for microsatellites from BAC end sequences of catfish: a resource for integration of linkage and physical maps. Aquaculture 275: 76-80.
Takano T, Sha Z, Peatman E, Terhune J, Liu H, Kucuktas H, Li P, Edholm E-S, Wilson M, Liu ZJ. (2008) The two channel catfish intelectin genes exhibit highly differential patterns of tissue expression and regulation after infection with Edwardsiella ictaluri. Developmental and Comparative Immunology 32: 693-705.
Abernathy, J., Xu, P., Li, P., Xu, D., Kucuktas H., Klesius, P., Arias, C., and Liu, Z.J. (2007) Generation and analysis of expressed sequence tags from the ciliate protozoan parasite Ichthyophthirius multifiliis. BMC Genomics 8:176. [fulltext]
Bao, B., Li, J., Wang, G., Liu. Z.J. (2007) Characterization of chemokine gene SCYA126 and its alternative splicing in channel catfish (Ictalurus punctatus). Journal of Fishery Sciences of China. 14(1):1-7.
Baoprasertkul, B., Peatman, E., Abernathy, J., Liu, Z.J. (2007). Structural characterization and expression analysis of Toll-like receptor 2 gene from catfish. Fish and Shellfish Immunology, 22(4):418-26.
Baoprasertkul P, Xu P, Peatman E, Kucuktas H, Liu ZJ. (2007) Divergent Toll-like receptors in catfish (Ictalurus punctatus): TLR5S, TLR20, TLR21. Fish Shellfish Immunology 23:1218-1230.
Jenny MJ, Chapman RW, Mancia A, Chen YA, McKillen DJ, Trent H, Lang P, Escoubas J-M, Bachere E, Boulo V, Liu ZJ, Gross PS, Cunningham C, Cupit PM, Guo X, Tanguy A, De Guise S, Almeida JS, Warr GW. (2007) Characterization of a cDNA Microarray for Crassostrea virginica and C. gigas. Marine Biotechnology 9: 577-591.
Kucuktas, H., and Liu, Z.J. (2007) Chapter 7 Allozyme and mitochondrial DNA markers. In: Aquaculture Genome Technologies (edited by Liu, Z.J.), pp. 72-86, Blackwell Publishing, Ames, IA.
Li P., Peatman E, Wang S, Feng J, He C, Baoprasertkul P, Xu P, Kucuktas H, Nandi S, Somridhivej B, Serapion J, Simmons M, Turan C, Liu L, Muir W, Dunham R, Brady Y, Grizzle J, Liu ZJ. (2007) Towards the catfish transcriptome: generation and analysis of 31,215 catfish ESTs. BMC Genomics 8:177. [fulltext]
Liu, Z.J. (2007) Fish genomics and genetic analytical technologies, with examples of their potential applications in management of fish genetic resources. Policy paper for FAO’s Commission on Genetic Resources for Food and Agriculture. In: Workshop on Status and Trends in Aquatic Genetic Resources---A basis for international policy, FAO Fisheries Proceedings 5 (eds. Devin Bartley, Brian Harvey, Roger Pullin), FAO, Rome, pp. 145-179.
Liu, Z.J. (2007) Chapter 1 Concept of genomes and genomics. In: Aquaculture Genome Technologies (edited by Liu, Z.J.), pp. 1-10, Blackwell Publishing, Ames, IA.
Liu, Z.J. (2007) Chapter 16 Genomescape: characterizing the repeat structure of the genome. In: Aquaculture Genome Technologies (edited by Liu, Z.J.), pp. 277-290, Blackwell Publishing, Ames, IA.
Liu, Z.J. (2007) Chapter 2 Marking the genome: Restriction fragment length polymorphism (RFLP). In: Aquaculture Genome Technologies (edited by Liu, Z.J.), pp. 11-20, Blackwell Publishing, Ames, IA.
Liu, Z.J. (2007) Chapter 3 Random amplified polymorphic DNA (RAPD). In: Aquaculture Genome Technologies (edited by Liu, Z.J.), pp. 21-28, Blackwell Publishing, Ames, IA.
Liu, Z.J. (2007) Chapter 4 Amplified fragment length polymorphism (AFLP). In: Aquaculture Genome Technologies (edited by Liu, Z.J.), pp. 29-42, Blackwell Publishing, Ames, IA.
Liu, Z.J. (2007) Chapter 5 Microsatellite markers and assessment of marker utility. In: Aquaculture Genome Technologies (edited by Liu, Z.J.), pp. 43-58, Blackwell Publishing, Ames, IA.
Liu, Z.J. (2007) Chapter 6 Single nucleotide polymorphism (SNP). In: Aquaculture Genome Technologies (edited by Liu, Z.J.), pp. 59-72, Blackwell Publishing, Ames, IA.
Liu, Z.J. (2007) Chapter 20 Transcriptome characterization through the analysis of expressed sequence tags. In: Aquaculture Genome Technologies (edited by Liu, Z.J.), pp. 301-356, Blackwell Publishing, Ames, IA.
Liu, Z.J. (2007) Chapter 25 DNA sequencing technologies. In: Aquaculture Genome Technologies (edited by Liu, Z.J.), pp. 465-476, Blackwell Publishing, Ames, IA.
Liu, Z.J. (2007) Chapter 26 Sequencing the genome. In: Aquaculture Genome Technologies (edited by Liu, Z.J.), pp. 477-490, Blackwell Publishing, Ames, IA.
Nandi S, Peatman E, Xu P, Wang S, Li P, and Liu ZJ. (2007) Repeat structure of the catfish genome: A genomic and transcriptomic assessment of Tc1-like transposon elements in channel catfish (Ictalurus punctatus). Genetica 131:81-90.
Peatman, E., and Liu, Z.J. (2007) Chapter 21 Microarray fundamentals: Basic principles and application in aquaculture. In: Aquaculture Genome Technologies (edited by Liu, Z.J.), pp. 357-370, Blackwell Publishing, Ames, IA.
Peatman E., and Liu ZJ. (2007) Evolution of CC chemokines in teleost fish: a case study in gene duplication and implications for immune diversity. Immunogenetics 59: 613-623.
Peatman, E, Baoprasertkul P, Terhune J, Xu P, Nandi S, Kucuktas H, Li P, Wang S, Somridhivej B, Dunham R, Liu, ZJ. (2007) Expression analysis of the acute phase response in channel catfish (Ictalurus punctatus) after infection with a Gram negative bacterium. Developmental and Comparative Immunology 31:1183-1196.
Quilang J., Wang, S., Li, P., Abernathy, J., Peatman, E., Wang, Y., Wang, L., Shi, Y., Wallace, R., Guo, X., and Liu Z. (2007) Generation and analysis of ESTs from the eastern oyster, Crassostrea virginica Gmelin and identification of microsatellite and SNP markers. BMC Genomics 8:157. [fulltext]
Wang S, Xu P, Thorsen, J., Zhu, B., de Jong, P., Waldbieser, G., Kucuktas, H., Liu ZJ. (2007) Characterization of a BAC library from channel catfish Ictalurus punctatus: indications of high rates of chromosomal reshuffling among teleost genomes. Marine Biotechnology 9:701-711.
Wang S, Zhang L, Zhan A, Wang X, Liu ZJ, Hu J, and Bao Z. (2007) Patterns of concerted evolution of rDNA family in natural population of Zhikong scallop, Chlamys farreri. Journal of Molecular Evolution 65:660-667.
Wang W., Chen L., Yang P., Hou Lin, He C., Gu Z., Liu ZJ. (2007) Assessing genetic diversity of populations of topmouth culter (Culter alburnus) in China using AFLP markers. Biochemical Systematics and Ecology 35: 662-669.
Xu P, Wang S, Liu L, Thorsen J, Kucuktas H, Liu ZJ. (2007) A BAC-based physical map of the channel catfish genome. Genomics 90:380-388.
Xu, P., Wang, S., and Liu, Z.J. (2007) Chapter 15 Physical characterization through BAC end sequencing. In: Aquaculture Genome Technologies (edited by Liu, Z.J.), pp. 263-276, Blackwell Publishing, Ames, IA.
