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    Journal Articles

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    Journal Articles

  1. Liu, S., Li, Y., Qin, Z., Geng, X., Bao, L., Kaltenboeck, L., Kucuktas, H., Dunham, R., and Liu, Z. (2015). High-density interspecific genetic linkage mapping provides insights into genomic incompatibility between channel catfish and blue catfish. Animal Genetics, doi: 10.1111/age.12372.
  2. Geng, X., Sha, J., Liu, S. K., Bao, L. S., Zhang, J. R., Wang, R. J., Yao, J., Li, C., Feng, J. B., Sun, F. Y., Sun, L. Y., Jiang, C., Zhang, Y., Chen, A. L., Dunham, R., Zhi, D. G., and Liu, Z. J. (2015). A genome-wide association study in catfish reveals the presence of functional hubs of related genes within QTLs for columnaris disease resistance. BMC Genomics 16.

  3. Yao, J., Mu, W. J., Liu, S. K., Zhang, J. R., Wen, H. S., and Liu, Z. J. (2015). Identification, phylogeny and expression analysis of suppressors of cytokine signaling in channel catfish. Molecular Immunology 64, 276-284.

  4. Jiang, C., Zhang, J. R., Yao, J., Liu, S. K., Li, Y., Song, L., Li, C., Wang, X. Z., and Liu, Z. J. (2015). Complement regulatory protein genes in channel catfish and their involvement in disease defense response. Developmental and Comparative Immunology 53, 33-41.

  5. Feng, J. B., Liu, S. K., Wang, R. J., Zhang, J. R., Wang, X. L., Kaltenboeck, L., Li, J. L., and Liu, Z. J. (2015). Molecular characterization, phylogenetic analysis and expression profiling of myoglobin and cytoglobin genes in response to heat stress in channel catfish Ictalurus punctatus. Journal of Fish Biology 86, 592-604.

  6. Mu, W. J., Yao, J., Zhang, J. R., Liu, S. K., Wen, H. S., Feng, J. B., and Liu, Z. J. (2015). Expression of tumor suppressor genes in channel catfish after bacterial infections. Developmental and Comparative Immunology 48, 171-177.

  7. Tian, Y., Yao, J., Liu, S. K., Jiang, C., Zhang, J. R., Li, Y., Feng, J. B., and Liu, Z. J. (2015). Identification and expression analysis of 26 oncogenes of the receptor tyrosine kinase family in channel catfish after bacterial infection and hypoxic stress. Comparative Biochemistry and Physiology D-Genomics & Proteomics 14, 16-25.

  8. Sun, L. Y., Liu, S. K., Bao, L. S., Li, Y., Feng, J. B., and Liu, Z. J. (2015). Claudin multigene family in channel catfish and their expression profiles in response to bacterial infection and hypoxia as revealed by meta-analysis of RNA-Seq datasets. Comparative Biochemistry and Physiology D-Genomics & Proteomics 13, 60-69.

  9. Feng, J. B., Liu, S. K., Wang, X. L., Wang, R. J., Zhang, J. R., Jiang, Y. L., Li, C., Kaltenboeck, L., Li, J. L., and Liu, Z. J. (2014). Channel catfish hemoglobin genes: Identification, phylogenetic and syntenic analysis, and specific induction in response to heat stress. Comparative Biochemistry and Physiology D-Genomics & Proteomics 9, 11-22.

  10. Geng, X., Feng, J. B., Liu, S. K., Wang, Y. P., Arias, C., and Liu, Z. J. (2014). Transcriptional regulation of hypoxia inducible factors alpha (HIF-alpha) and their inhibiting factor (FIH-1) of channel catfish (Ictalurus punctatus) under hypoxia. Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology 169, 38-50.

  11. Hutson, A. M., Liu, Z., Kucuktas, H., Umali-Maceina, G., Su, B., and Dunham, R. A. (2014). Quantitative trait loci map for growth and morphometric traits using a channel catfish x blue catfish interspecific hybrid system. Journal of Animal Science 92, 1850-1865.

  12. Wang, R. J., Zhang, Y., Liu, S. K., Li, C., Sun, L. Y., Bao, L. S., Feng, J. B., and Liu, Z. J. (2014). Analysis of 52 Rab GTPases from channel catfish and their involvement in immune responses after bacterial infections. Developmental and Comparative Immunology 45, 21-34.

  13. Wong, L. L., Peatman, E., Kelly, L., Kucuktas, H., Na-Nakorn, U., and Liu, Z. J. (2014). Catfish Species Identification Using Lab-On-Chip PCR-RFLP. Journal of Aquatic Food Product Technology 23, 2-13.

  14. Xu, P., Zhang, X. F., Wang, X. M., Li, J. T., Liu, G. M., Kuang, Y. Y., Xu, J., Zheng, X. H., Ren, L. F., Wang, G. L., Zhang, Y., Huo, L. H., Zhao, Z. X., Cao, D. C., Lu, C. Y., Li, C., Zhou, Y., Liu, Z. J., Fan, Z. H., Shan, G. L., Li, X. G., Wu, S. X., Song, L. P., Hou, G. Y., Jiang, Y. L., Jeney, Z., Yu, D., Wang, L., Shao, C. J., Song, L., Sun, J., Ji, P. F., Wang, J., Li, Q., Xu, L. M., Sun, F. Y., Feng, J. X., Wang, C. H., Wang, S. L., Wang, B. S., Li, Y., Zhu, Y. P., Xue, W., Zhao, L., Wang, J. T., Gu, Y., Lv, W. H., Wu, K. J., Xiao, J. F., Wu, J. Y., Zhang, Z., Yu, J., and Sun, X. W. (2014). Genome sequence and genetic diversity of the common carp, Cyprinus carpio. Nature Genetics 46, 1212-1219.

  15. Yao, J., Li, C., Zhang, J. R., Liu, S. K., Feng, J. B., Wang, R. J., Li, Y., Jiang, C., Song, L., Chen, A. L., and Liu, Z. J. (2014). Expression of nitric oxide synthase (NOS) genes in channel catfish is highly regulated and time dependent after bacterial challenges. Developmental and Comparative Immunology 45, 74-86.

  16. Cui, J., Liu, S. K., Zhang, B., Wang, H. D., Sun, H. J., Song, S. H., Qiu, X. M., Liu, Y., Wang, X. L., Jiang, Z. Q., and Liu, Z. J. (2014). Transciptome Analysis of the Gill and Swimbladder of Takifugu rubripes by RNA-Seq. Plos One 9.

  17. Jiang, Y. L., Gao, X. Y., Liu, S. K., Zhang, Y., Liu, H., Sun, F. Y., Bao, L. S., Waldbieser, G., and Liu, Z. J. (2013). Whole genome comparative analysis of channel catfish (Ictalurus punctatus) with four model fish species. BMC Genomics 14.

  18. Sahu, D. K., Panda, S. P., Panda, S., Das, P., Meher, P. K., Hazra, R. K., Peatman, E., Liu, Z. J. J., Eknath, A. E., and Nandi, S. (2013). Identification of reproduction-related genes and SSR-markers through expressed sequence tags analysis of a monsoon breeding carp rohu, Labeo rohita (Hamilton). Gene 524, 1-14.

  19. Wang, R. J., Sun, L. Y., Bao, L. S., Zhang, J. R., Jiang, Y. L., Yao, J., Song, L., Feng, J. B., Liu, S. K., and Liu, Z. J. (2013). Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish. BMC Genomics 14.

  20. Liu, S. K., Wang, X. L., Sun, F. Y., Zhang, J. R., Feng, J. B., Liu, H., Rajendran, K. V., Sun, L. Y., Zhang, Y., Jiang, Y. L., Peatman, E., Kaltenboeck, L., Kucuktas, H., and Liu, Z. J. (2013). RNA-Seq reveals expression signatures of genes involved in oxygen transport, protein synthesis, folding, and degradation in response to heat stress in catfish. Physiological Genomics 45, 462-476.

  21. Zhang, Y., Liu, S. K., Lu, J. G., Jiang, Y. L., Gao, X. Y., Ninwichian, P., Li, C., Waldbieser, G., and Liu, Z. J. (2013). Comparative genomic analysis of catfish linkage group 8 reveals two homologous chromosomes in zebrafish and other teleosts with extensive inter-chromosomal rearrangements. BMC Genomics 14.

  22. Liu S, Zhang Y, Zhou Z, Waldbieser G, Sun F, Lu J, Zhang J, Jiang Y, Zhang H, Wang X, Rajendran KV, Kucuktas H, Peatman E, Liu ZJ. (2013). Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. BMC Genomics, 14:1.

  23. Abernathy, J., Xu, D. H., Peatman, E., Kucuktas, H., Klesius, P., and Liu, Z. J. (2011). Gene expression profiling of a fish parasite Ichthyophthirius multifiliis: Insights into development and senescence-associated avirulence. Comparative Biochemistry and Physiology D-Genomics & Proteomics 6, 382-392.

  24. Zhang J, Liu S, K.V. Rajendran, Sun L, Zhang Y, Sun F, Kucuktas H, Liu H, and Z Liu (2013) Pathogen recognition receptors in channel catfish: III Phylogeny and expression analysis of Toll-like receptors. Developmental & Comparative Immunology, Volume 40, 185-194.

  25. Liu S, Li Q, Liu Z (2013) Genome-Wide Identification, Characterization and Phylogenetic Analysis of 50 Catfish ATP-Binding Cassette (ABC) Transporter Genes. PLoS ONE 8(5): e63895. doi:10.1371/journal.pone.0063895

  26. Preziosa E, Liu S, Terova G, Gao X, Liu H, Kucuktas H, Terhune J, and Liu ZJ. (2013). Effect of Nutrient Restriction and Re-feeding on Calpain Family Genes in Skeletal Muscle of Channel Catfish (Ictalurus punctatus). PLoS One, PLoS ONE 8(3): e59404. doi:10.1371/journal.pone.0059404.

     

  27. Sookruksawong S, Sun F, Liu ZJ, Tassanakajon A. (2013). RNA-Seq analysis reveals genes associated with resistance to Taura syndrome virus (TSV) in the Pacific white shrimp Litopenaeus vannamei. Developmental and Comparative Immunology, in press. doi: 10.1016/j.dci.(2013).07.020.

  28. Sun F, Liu S, Gao X, Jiang Y, Perera D, Wang X, Li C, Sun L, Zhang J, Kaltenboeck L, Dunham R, Liu ZJ. (2013). Male-biased genes in catfish as revealed by RNA-Seq analysis of the testis transcriptome. PLoS One 8(7): e68452. doi:10.1371/journal.pone.0068452.
  29. Sahu D, Panda SP, Panda S, Das P, Meher PK, Hazra RK, Peatman E, Liu ZJ, Eknath AE, and Nandi S. (2013). Identification of reproduction-related genes and SSR-markers through expressed sequence tags analysis of a monsoon breeding carp rohu, Labeo rohita (Hamilton). Gene 524: 1-14.
  30. Wang R, Feng J, Li C, Liu S, Zhang Y, Liu ZJ. (2013). Four lysozymes (one c-type and three g-type) in catfish are drastically but differentially induced after bacterial infection. Fish and Shellfish Immunology 35: 136-145.
  31. Liu S, Wang X, Sun F, Zhang J, Feng J, Liu H, Rajendran KV, Sun L, Zhang Y, Jiang Y, Kaltenboeck L., Kucuktas H, and Liu ZJ. (2013). RNA-Seq reveals expression signatures of genes involved in oxygen transport, protein synthesis, folding and degradation in response to heat stress in catfish. Physiological Genomics 45:462-476.
  32. Niu D, Wang L, Sun F, Feng B, Jin K, Liu ZJ, Li J. (2013). Development of molecular resources for an intertidal clam, Sinonovacula constricta using 454 transcriptome sequencing. PLoS One 8: e67456.
  33. Zhang J, Liu S, Rajendran KV, Sun L, Zhang Y, Sun F, Kucuktas H, Liu H, Liu ZJ. (2013). Pathogen recognition receptors in channel catfish: Ш. phylogeny and expression analysis of Toll-like receptors. Developmental and Comparative Immunology 40: 185-194.
  34. Zhang Y, Liu S, Lu J, Jiang Y, Gao X, Ninwichian P, Li C, Waldbieser G, Liu ZJ. (2013). Comparative genomic analysis of catfish linkage group 8 reveals two homologous chromosomes in zebrafish with extensive inter-chromosomal rearrangements. BMC Genomics, BMC Genomics 14:387, DOI: 10.1186/1471-2164-14-387.
  35. Liu S, Li Q, Liu ZJ. (2013). Genome-wide identification, characterization and phylogenetic analysis of 50 catfish ATP-binding cassette (ABC) transporter genes. PLoS ONE 8(5): e63895. doi:10.1371/journal.pone.0063895.
  36. Jiang Y, Ninwichian P, Liu S, Zhang J, Liu H, Kucuktas H, Liu ZJ. (2013). Generation of physical contig-specific sequences useful for whole genome sequence assembly and scaffolding. PLoS One, in press.
  37. Preziosa E, Liu S, Gao X, Liu H, Kucuktas H, Terova G, and Liu ZJ. (2013). Effect of Nutrient Restriction and Re-feeding on Calpain Family Genes in Skeletal Muscle of Channel Catfish (Ictalurus punctatus). PLoS One 8:e59404.
  38. Wong LL, Peatman E, Kelly L, Kucuktas H, Na-nakorn U, and Liu ZJ. (2013). Catfish species identification using Lab-on-Chip PCR-RFLP. Journal of Aquatic Food Product Technology, in press.
  39. Sun F, Peatman E, Li C, Liu S, Jiang Y, Zhou Z, Liu ZJ. (2012). Transcriptomic signatures of attachment, NF-κB suppression and IFN stimulation in the catfish gill following columnaris bacterial infection. Developmental and Comparative Immunology 38: 169-180.
  40. Wang R, Li C, Stoeckel J, Moyer G, Liu ZJ, and Peatman E. (2012). Rapid development of molecular resources for a freshwater mussel, Villosa lienosa (Bivalvia: Unionidae) using a RNA-seq-based approach. Freshwater Science (formerly Journal of the North American Benthological Society) 31: 695-708.
  41. Ninwichian P, Peatman E, Liu H, Kucuktas H, Somridhivej B, Liu S, Li P, Jiang Y, Sha Z, Kaltenboeck M, Abernathy J, Wang W, Chen F, Lee Y, Wong L, Wang S, Lu J, Liu ZJ. (2012). Second generation genetic linkage map and its integration with the BAC-based physical map in channel catfish. G3: Genes, Genomes, Genetics 2: 1233-1241.
  42. Lu J, Peatman E, Tang H, Lewis J, Liu ZJ. (2012). Profiling of gene duplication patterns of teleost genomes: Evidence for rapid lineage-specific genome expansion mediated by recent tandem duplications. BMC Genomics 13:246.
  43. Liu S, Zhang Y, Zhou Z, Waldbieser G, Sun F, Lu J, Zhang J, Jiang Y, Zhang H, Wang X, Rajendran KV, Kucuktas H, Peatman E, Liu ZJ. (2012). Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. BMC Genomics 13:595. doi:10.1186/1471-2164-13-595
  44. Ninwichian P, Peatman E, Perera D, Liu S, Kucuktas H, Dunham R, and Liu Z.J. (2012). Identification of a sex-linked marker for channel catfish. Animal Genetics 43:476-477. doi:10.1111/j.1365-2052.(2011).02276.x
  45. Li C, Zhang Y, Wang R, Lu J, Nandi S, Mohanty S, Terhune J, Liu ZJ, Peatman E. (2012). RNA-Seq analysis of mucosal immune responses reveals signatures of intestinal barrier disruption and pathogen entry following Edwardsiella ictaluri infection in channel catfish, Ictalurus punctatus. Fish & Shellfish Immunology 32:816-827.
  46. Rajendran KV, Zhang J, Liu S, Kucuktas H, Wang X, Liu H, Wood T, Terhune J, Peatman E, Liu ZJ. (2012). Pathogen recognition receptors in channel catfish: II. Identification, phylogeny and expression of retinoic acid-inducible gene I (RIG-I)-like receptors (RLRs), Developmental and Comparative Immunology 37:381-389.
  47. Browdy, C.L., Hulata, G., Liu, Z., Allan, G.L., Sommerville, C., Passos de Andrade, T., Pereira, R., Yarish, C., Shpigel, M., Chopin, T., Robinson, S., Avnimelech, Y. & Lovatelli, A. (2012). Novel and emerging technologies: can they contribute to improving aquaculture sustainability? In R.P. Subasinghe, J.R. Arthur, D.M. Bartley, S.S. De Silva, M. Halwart, N. Hishamunda, C.V. Mohan & P. Sorgeloos, eds. Farming the Waters for People and Food. Proceedings of the Global Conference on Aquaculture 2010, Phuket, Thailand. 22–25 September 2010. pp. 149–191. FAO, Rome and NACA, Bangkok.
  48. Zhang H, Peatman E, Liu H, Feng T, Chen L, Liu ZJ. (2012). Molecular characterization of three L-type lectin genes from channel catfish, Ictalurus punctatus and their responses to Edwardsiella ictaluri challenge. Fish and Shellfish Immunology 32:598-608. doi: 10.1016/j.fsi.2011.12.009.
  49. Rajendran KV, Zhang J, Liu Shikai, Kucuktas H, Wang X, Liu H, Sha Z, Terhune J, Peatman E, Liu ZJ. (2012). Pathogen recognition receptors in channel catfish: I. Identification, phylogeny and expression of NOD-like receptors. Developmental and Comparative Immunology 37:77-86.
  50. Zhou Z, Liu H, Liu S, Sun F, Peatman E, Kucuktas H, Kaltenboeck L, Feng T, Zhang H, Niu D, Lu J, Waldbieser G, Liu ZJ. (2012). Alternative complement pathway of channel catfish (Ictalurus punctatus): molecular characterization, mapping and expression analysis of factors Bf/C2 and Df. Fish and Shellfish Immunology 32:186-195. doi:10.1016/j.fsi.(2011).11.012.
  51. Zhang H, Peatman E, Liu H, Niu D, Feng T, Kucuktas H, Waldbieser G, Chen L, Liu ZJ. (2012). Characterization of mannose-binding lectin from channel catfish (Ictalurus punctatus). Research in Veterinary Science 92:408-413.
  52. Jiang Y, Lu J, Peatman E, Kucuktas H, Liu S, Wang S, Sun F, Liu ZJ. (2011). A Pilot study for channel catfish whole genome sequencing and de novo assembly. BMC Genomics 12:629 doi:10.1186/1471-2164-12-629.
  53. Feng T, Zhang H, Liu H, Zhou Z, Niu D, Wong L, Kucuktas H, Liu X, Peatman E, Liu ZJ. (2011). Molecular characterization and expression analysis of the channel catfish cathepsin D genes. Fish and Shellfish Immunology 31:164-169.
  54. Niu D, 1, Peatman E, Liu H, Lu J, Kucuktas H, Liu S, Sun F, Zhang H, Feng T, Zhou Z, Terhune J, Waldbieser G, Li J, Liu ZJ. (2011). Microfibrillar-associated protein 4 (MFAP4) genes in catfish play a novel role in innate immune responses. Developmental and Comparative Immunology 35:568-579.
  55. Abernathy J, Xu D-H, Peatman E, Kucuktas H, Klesius P, Liu ZJ. (2011). Gene expression profiling of a fish parasite Ichthyophthirius multifiliis: insights into development and senescence-associated avirulence. Comparative Biochemistry and Physiology, Part D, Genomics and Proteomics, 6: 382–392.
  56. Wong L, Peatman E, Kucuktas H, Zhou C, Na-Nakorn U, and Liu ZJ. (2011). DNA Barcoding of Catfish: Species Authentication and Phylogenetic Assessment. PLoS One 6: e17812.
  57. Liu H, Peatman E, Wang W, Abernathy J, Liu S, Kucuktas H, Terhune J, Xu D-H, Klesius P, Liu ZJ. (2011). Molecular responses of ceruloplasmin to Edwardsiella ictaluri infection and iron overload in channel catfish (Ictalurus punctatus). Fish and Shellfish Immunology 30: 992-997.
  58. Liu H, Peatman E, Wang W, Abernathy J, Liu S, Kucuktas H, Lu J, Xu D-H, Klesius P, Waldbieser G, Liu ZJ. (2011). Molecular responses of calreticulin genes to iron overload and disease infection in channel catfish (Ictalurus punctatus). Developmental and Comparative Immunology 35: 267-272.
  59. Liu S, Zhou Z, Lu J, Sun F, Wang S, Liu H, Jiang Y, Kucuktas H, Kaltenboeck L, Peatman E, Liu Z.J. (2011). Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array. BMC Genomics 12:53.
  60. Bao B, Ke Z, Xing J, Peatman E, Liu ZJ, Xie C, Xu B, Gai J, Gong X, Yang G, Jiang Y, Tang W, and Ren D. (2011). Proliferating cells in suborbital tissue drive eye migration in flatfish. Developmental Biology 351: 200-207.
  61. Liu ZJ. (2011). Development of genomic resources in support of sequencing, assembly, and annotation of the catfish genome. Comparative Biochemistry and Physiology, Part D, Genomics and Proteomics 6:11-17. doi:10.1016/j.cbd.(2010).03.001.
  62. Xu D-H, Klesius P, Peatman E, and Liu ZJ. (2011). Susceptibility of channel catfish, blue catfish and channel × blue catfish hybrid to Ichthyophthirius multifiliis. Aquaculture 311:25-30.
  63. Lu J, Peatman E, Yang Q, Wang S, Hu Z, Kucuktas H, Liu ZJ. (2011). Catfish Genome Database cBARBEL: A informatic platform for genome biology of ictalurid catfish. Nucleic Acids Research 39 (Database Issue): D815-21, doi:10.1093/nar/gkq765.
  64. Liu W, Li H, Bao X, Gao X, Li Y, He C, and Liu ZJ. (2010). Genetic differentiation between natural and hatchery stocks of Japanese scallop (Mizuhopecten yessoensis) as revealed by AFLP analysis. International Journal of Molecular Sciences 11: 3933-3941. doi:10.3390/ijms11103933.
  65. Wang S, Liu H, Bushek D, Ford S, Peatman E, Kucuktas H, Quilang J, Li P, Wallace R, Wang Y, Guo X, and Liu ZJ. (2010). Microarray analysis of gene expression in eastern oyster (Crassostrea virginica) reveals a novel combination of antimicrobial and oxidative stress host responses after dermo (Perkinsus marinus) challenge. Fish and Shellfish Immunology 29: 921-929.
  66. Xu B, Wang S, Jiang Y, Yang L, Li P, Xie C, Xing J, Ke Z, Li J, Gai J, Yang G, Bao B, and Liu ZJ. (2010). Generation and analysis of ESTs from the grass carp, Ctenopharyngodon idellus. Animal Biotechnology 21: 1-9.
  67. Chen F, Lee Y, Jiang Y, Wang S, Peatman E, Abernathy J, Liu H, Liu S, Kucuktas H, Ke C, Liu ZJ. (2010). Identification and characterization of full-length cDNAs in catfish (Ictalurus spp.). PLoS One 12, e11546.
  68. Lu J, Peatman E, Wang W, Yang Q, Abernathy J, Wang S, Kucuktas H, Liu ZJ. (2010). Alternative splicing in teleost fish genomes: Same-species and cross-species analysis and comparisons. Molecular Genetics and Genomics 283:531-539.
  69. Liu ZJ, Peatman E. (2010). Whole Genome Sequencing of Aquaculture Species: Identifying the Genotypes behind Production Phenotypes. Global Aquaculture Advocate, March/April (2010):68-70.
  70. Liu H, Takano T, Peatman E, Abernathy J, Wang S, Sha Z, Kucuktas H, Liu ZJ. (2010). Molecular characterization and gene expression of the channel catfish ferritin H subunit after bacterial infection and iron treatment. Journal of Experimental Zoology, Part A: Ecological Genetics and Physiology 313:359-368.
  71. Jiang Y, Abernathy J, Peatman E, Liu H, Wang S, Xu D-H, Kucuktas H, Klesius P, Liu Z.J. (2010). Identification and characterization of matrix metalloproteinase-13 sequence structure and expression during embryogenesis and infection in channel catfish (Ictalurus punctatus). Developmental and Comparative Immunology 34:590-597.
  72. Sha Z, Wang S, Zhuang Z, Wang Q, Wang Q, Li P, Ding H, Wang N, Liu ZJ, Chen S. (2010). Generation and analysis of 10,000 ESTs from the half smooth tongue sole, Cynoglossus semilaevis and identification of microsatellite and SNP markers. Journal of Fish Biology 76:1190–1204.
  73. Wang S, Abernathy J, Waldbieser G, Lindquist E, Richardson P, Lucas S, Wang M, Li P, Thimmapuram J, Liu L, Vullaganti D, Kucuktas H, Murdock C, Small B, Wilson M, Liu H, Jiang Y, Lee Y, Chen F, Lu J, Wang W, Peatman E, Xu P, Somridhivej B, Baoprasertkul P, Quilang J, Sha Z, Bao B, Wang Y, Wang Q, Takano T, Nandi S, Liu S, Wong L, Kaltenboeck L, Quiniou S, Bengten E, Miller N, Trant J, Rokhsar D, Liu ZJ., and Catfish Genome Consortium. (2010). Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies. Genome Biology 11 (1):R8.
  74. Wang S, Zhang L, Hu J, Bao Z, Liu ZJ. (2010). Molecular and cellular evidence for biased mitotic gene conversion in hybrid scallop. BMC Evolutionary Biology 10:6. doi:10.1186/1471-2148-10-6.
  75. Abernathy J, Peatman E, Liu ZJ. (2010). Basic Aquaculture Genetics, SRAC Publication No. 5001, 1-14.
  76. Liu H, Tomokazu T, Abernathy J, Wang S, Sha Z, Terhune J, Kucuktas H, Jiang Y, Liu ZJ. (2010). Structure and expression of transferrin gene of channel catfish, Ictalurus punctatus. Fish and Shellfish Immunology 28:159-166.
  77. Abernathy J, Lu J, Liu H, Kucuktas H, Liu ZJ. (2009). Molecular characterization of complement factor I reveals constitutive expression in channel catfish. Fish & Shellfish Immunology 27:529–534.
  78. Liu H, Jiang Y, Wang S, Ninwichian P, Somridhivej B, Xu P, Abernathy J, Kucuktas H, Liu ZJ. (2009). Comparative analysis of catfish BAC end sequences with the zebrafish genome. BMC Genomics 10:592.
  79. Kucuktas H, Wang S, Li P, He C, Xu P, Sha Z, Liu H, Jiang Y, Baoprasertkul P, Somridhivej B, Wang Y, Abernathy J, Guo X, Liu L, Muir W, Liu ZJ. (2009). Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers. Genetics 181:1649-1660.
  80. Xu D, Panangala V, van Santen V, Dybvig K, Abernathy J, Klesius P, Liu ZJ, and Russo R. (2009). Molecular characterization of an immobilization antigen gene of the fish-parasite protozoan Ichthiophthirius multifiliis strain ARS-6. Aquaculture Research 40:1884-1892.
  81. Sha Z, Abernathy JW, Wang S, Li P, Kucuktas H, Liu H, Peatman E, and Liu ZJ. (2009). NOD-like subfamily of the nucleotide-binding domain and leucine rich repeat containing family receptors and their expression in channel catfish. Dev. Comp. Immunology 31:991-999.
  82. Abernathy JW, Xu D-H, Li P, Klesius P, Liu ZJ. (2009). Transcriptomic profiling of Ichthyophthirius multifiliis reveals polyadenylation of the large subunit ribosomal RNA. Comparative Biochemistry and Physiology, Part D, Genomics and Proteomics 4:179-186.
  83. Liu, Z.J. (2008). Aquaculture genomics---progress in identifying species genetics continues. Global Aquaculture Advocate, November/December (2008):75-78.
  84. Wang S, Sha Z, Sonstegard TS, Liu H, Xu P, Somridhivej B, Peatman E, Kucuktas H, Liu ZJ. (2008). Quality assessment parameters for EST-derived SNPs from catfish. BMC Genomics 9:450, doi:10.1186/1471-2164-9-450.
  85. Lamkom T, Kucuktas H, Liu Z.J, Li P, Na-Nakorn U, Klinbunya S, Hutson A, Chaimongkol A, Ballenger J, Umali G, and Dunham R. (2008). Microsatellite Variation among Domesticated Populations of Channel (Ictalurus punctatus) and Blue Catfish (I. furcatus). Kasetsart Fisheries Bulletin 32:37-47.
  86. Liu ZJ, Li RW, Waldbieser G. (2008). Utilization of microarray technology for functional genomics in ictalurid catfish. Journal of Fish Biology 72(9): 2377-2390.
  87. Takano T, Sha Z, Peatman E, Terhune J, Liu H, Kucuktas H, Li P, Edholm E-S, Wilson M, Liu ZJ. (2008). The two channel catfish intelectin genes exhibit highly differential patterns of tissue expression and regulation after infection with Edwardsiella ictaluri. Developmental and Comparative Immunology 32: 693-705.
  88. Sha Z, Xu P, Takano T, Liu H, Terhune J, Liu ZJ. (2008). The warm temperature acclimation protein Wap65 as an immune response gene: Its duplicates are differentially regulated by temperature and bacterial infections. Molecular Immunology 45: 1458-1469.
  89. Somridhivej B, Wang S., Sha Z., Liu H., Quilang J., Xu P, Li P, Liu ZJ. (2008). Characterization, polymorphism assessment, and database construction for microsatellites from BAC end sequences of catfish: a resource for integration of linkage and physical maps. Aquaculture 275: 76-80.
  90. Peatman E, Terhune J, Baoprasertkul P, Xu P, Nandi S, Wang S, Somridhivej B, Kucuktas H, Li P, Dunham R, Liu ZJ. (2008). Microarray analysis of gene expression in the blue catfish liver reveals early activation of the MHC class I pathway after infection with Edwardsiella ictaluri. Molecular Immunology 45: 553-566.
  91. He C., Ge L, Zhou Z, X Mu Y, Liu W, Gao X, and Liu ZJ. (2008). Sequence and organization of the complete mitochondrial genome of spotted halibut (Verasper variegatus) and barfin flounder (Verasper moseri). DNA Sequence 19:246-255.
  92. Liu, Z.J. (2007). Genomic resources and their informatic analysis for comparative genomics in catfish. Aquaculture 272: S286-S286.
  93. Wang S, Zhang L, Zhan A, Wang X, Liu ZJ, Hu J, and Bao Z. (2007). Patterns of concerted evolution of rDNA family in natural population of Zhikong scallop, Chlamys farreri. Journal of Molecular Evolution 65:660-667.
  94. Peatman E., and Liu ZJ. (2007). Evolution of CC chemokines in teleost fish: a case study in gene duplication and implications for immune diversity. Immunogenetics 59: 613-623.
  95. Wang W., Chen L., Yang P., Hou Lin, He C., Gu Z., Liu ZJ. (2007). Assessing genetic diversity of populations of topmouth culter (Culter alburnus) in China using AFLP markers. Biochemical Systematics and Ecology 35: 662-669.
  96. Quilang J., Wang S, Li P, Abernathy J, Peatman E, Wang, Y., Wang, L., Shi, Y., Wallace R, Guo, X., and Liu ZJ. (2007). Generation and analysis of ESTs from the eastern oyster, Crassostrea virginica Gmelin and identification of microsatellite and SNP markers. BMC Genomics 8: 157.
  97. Li P, Peatman E, Wang S, Feng J, He C, Baoprasertkul P, Xu P, Kucuktas H, Nandi S, Somridhivej B, Serapion J, Simmons M, Turan C, Liu L, Muir W, Dunham R, Brady Y, Grizzle J, Liu ZJ. (2007). Towards the ictalurid catfish transcriptome: generation and analysis of 31,215 catfish ESTs. BMC Genomics 8: 177.
  98. Xu P, Wang S, Liu L, Thorsen J, Kucuktas H, Liu ZJ. (2007). A BAC-based physical map of the channel catfish genome. Genomics 90:380-388.
  99. Wang S, Xu P, Thorsen, J., Zhu, B., de Jong, P., Waldbieser, G., Kucuktas, H., Liu ZJ. (2007). Characterization of a BAC library from channel catfish Ictalurus punctatus: indications of high rates of chromosomal reshuffling among teleost genomes. Marine Biotechnology 9:701-711.
  100. Abernathy J, Xu P, Li P, Xu, D., Kucuktas H, Klesius, P., Arias, C., and Liu ZJ. (2007). Generation and analysis of expressed sequence tags from the ciliate protozoan parasite Ichthyophthirius multifiliis. BMC Genomics 8:176.
  101. Peatman E, Baoprasertkul P, Terhune J, Xu P, Nandi S, Kucuktas H, Li P, Wang S, Somridhivej B, Dunham R, Liu, ZJ. (2007). Expression analysis of the acute phase response in channel catfish (Ictalurus punctatus) after infection with a Gram negative bacterium. Developmental and Comparative Immunology 31:1183-1196.
  102. Baoprasertkul P, Xu P, Peatman E, Kucuktas H, Liu ZJ. (2007). Divergent Toll-like receptors in catfish (Ictalurus punctatus): TLR5S, TLR20, TLR21. Fish Shellfish Immunology 23:1218-1230.
  103. Bao B, Li J, Wang G, Liu ZJ. (2007). Characterization of chemokine gene SCYA126 and its alternative splicing in channel catfish (Ictalurus punctatus). Journal of Fishery Sciences of China 14:1-7.
  104. Nandi S, Peatman E, Xu P, Wang S, Li P, and Liu ZJ. (2007). Repeat structure of the catfish genome: A genomic and transcriptomic assessment of Tc1-like transposon elements in channel catfish (Ictalurus punctatus). Genetica 131:81-90
  105. Jenny MJ, Chapman RW, Mancia A, Chen YA, McKillen DJ, Trent H, Lang P, Escoubas J-M, Bachere E, Boulo V, Liu ZJ, Gross PS, Cunningham C, Cupit PM, Guo X, Tanguy A, De Guise S, Almeida JS, Warr GW. (2007). Characterization of a cDNA Microarray for Crassostrea virginica and C. gigas. Marine Biotechnology 9: 577-591.
  106. Baoprasertkul, B, Peatman E, Abernathy J, Liu ZJ. (2007). Structural characterization and expression analysis of Toll-like receptor 2 gene from catfish. Fish and Shellfish Immunology 22:418-426.
  107. Bao B, Wang G, Li J, Liu ZJ. (2006). Homologue analysis of chemokine gene SCYA107 between Ictalurus punctatus and Ictalurus furcatus. Journal of Shanghai Fisheries University 15:385-389.
  108. Baoprasertkul P, Peatman E, Somridhivej B, Liu ZJ. (2006). Toll-like receptor 3 and TICAM genes in catfish: species-specific expression profiles following infection with Edwardsiella ictaluri. Immunogenetics 58:817-830.
  109. Zhang Y, Chen S, Liu Y, Sha Z, and Liu ZJ. (2006). Major histocompatibility complex class II B allele polymorphism and its association with resistance/susceptibility to Vibrio Anguillarum in Japanese flounder Paralichthys olivaceus. Marine Biotechnology 8:600-610.
  110. Dunham R, Liu ZJ. (2006). Transgenic fish-where we are and where do we go? Israel Journal of Aquaculture-Bamidgeh 58:297-319.
  111. Liu ZJ. (2006). Transcriptome characterization through the generation and analysis of expressed sequence tags: Factors to consider for a successful EST project. Israel Journal of Aquaculture-Bamidgeh 58:328-341.
  112. Xu P, Wang S, Liu L, Peatman E, Somridhivej B, Thimmapuram J, Gong G, Liu ZJ. (2006). Channel catfish BAC-end sequences for marker development and assessment of syntenic conservation with other fish species. Animal Genetics 37:321-326.
  113. Hou L, Bi X, Zou X, He C, Yang L, Qu R, Liu ZJ. (2006). Molecular systematics of bisexual Artemia populations. Aquaculture Research 37:671-680.
  114. Arias CR, Abernathy J, and Liu ZJ. (2006). Combined use of 16S ribosomal DNA and automated ribosomal intergenic spacer analysis (ARISA) to study the bacterial community in catfish ponds. Letters in Applied Microbiology 43:287-292.
  115. Peatman E, and Liu ZJ. (2006). CC chemokines in zebrafish: evidence for extensive intrachromosomal gene duplications. Genomics 88:381-385.
  116. Simmons M, Mickett K, Kucuktas H, Li P, Dunham R, Liu ZJ. Comparison of domestic and wild catfish populations provide no evidence for genetic impact. (2006). Aquaculture 252:133-146.
  117. Bao B, Peatman E, Xu P, Baoprasertkul B, Wang G, Liu ZJ. (2006). Characterization of 23 CC chemokine genes and analysis of their expression in channel catfish (Ictalurus punctatus). Developmental and Comparative Immunology 30:783-796.
  118. Peatman E, Bao B, Xu P, Baoprasertkul P, Liu ZJ. (2006). Catfish CC chemokines: genomic clustering, duplications, and expression after bacterial infection with Edwardsiella ictaluri. Molecular Genetics and Genomics 275:297-309.
  119. Wang Q, Wang Y, Xu P, Liu ZJ. (2006). NK-lysin of channel catfish: gene triplication, sequence variation, and expression analysis. Molecular Immunology 43:1676-1686.
  120. Wang Y, Wang Q, Baoprasertkul P, Peatman E, Liu ZJ. (2006). Genomic organization, gene duplication, and expression analysis of interleukin-1 in channel catfish (Ictalurus punctatus). Molecular Immunology 43:1653-1664.
  121. Wang Q, Bao B, Wang Y, Peatman E, and Liu ZJ. (2006). Characterization of a NK-lysin antimicrobial peptide gene from channel catfish. Fish and Shellfish Immunology 20:419-426.
  122. Bao B, Peatman E, Xu P, Li P, Zeng H, He C, and Liu ZJ. (2006). The catfish liver-expressed antimicrobial peptide 2 (LEAP-2) gene is expressed in a wide range of tissues and developmentally regulated. Molecular Immunology 43:367-377.
  123. Bao B, Yang G, Liu ZJ, Li S, Wang Z, Ren D. (2005). Isolation of Sfrs3 gene and its differential expression during metamorphosis involving eye migration of Japanese flounder Paralichthys olivaceus. Biochimica et Biophysica Acta 1725:64-70.
  124. Peatman E, Bao B, Baoprasertkul, P, and Liu ZJ. (2005). In silico identification and expression analysis of 12 novel CC chemokines in catfish. Immunogenetics 57:409-419.
  125. Bao B, Peatman E, Li P, He C, and Liu ZJ. (2005). Catfish hepcidin gene is expressed in a wide range of tissues and exhibits tissue-specific upregulation after bacterial infection. Developmental and Comparative Immunology 29:939-950.
  126. Xu P, Bao B, He Q, Peatman E, He C, Liu ZJ. (2005). Characterization and expression analysis of bactericidal permeability-increasing protein (BPI) antimicrobial peptide gene from channel catfish Ictalurus punctatus. Developmental and Comparative Immunology 29:865-878.
  127. Baoprasertkul P, He C, Peatman E, Zhang S, Li P, Liu ZJ. (2005). Constitutive expression of three novel catfish CXC chemokines: homeostatic chemokines in teleost fish. Molecular Immunology 42:1355-1366.
  128. Chen L, He C, Baoprasertkul, P, Xu P, Li P, Serapion, J, Waldbieser G, Wolters, W, Liu ZJ. (2005). Analysis of a catfish gene resembling interleukin-8: cDNA cloning, gene structure, and expression after infection with Edwardsiella ictaluri. Developmental and Comparative Immunology 29:135-142.
  129. Liu YG, Chen SL, Li BF, Wang ZJ, Liu ZJ. (2005). Analysis of genetic variation in selected stocks of hatchery flounder, Paralichthys olivaceus, using AFLP markers. Biochemical Systematics and Ecology 33:993-1005.
  130. Liu ZJ, Cordes JF. (2004). Erratum to DNA marker technologies and their applications in aquaculture genetics. Aquaculture 242:735-736.
  131. Ligeon C, Jolly C, Argue B, Phelps R, Liu ZJ, Yant R, Benfrey J, Crews J, Gagalac F, and Dunham R. (2004). Economics of production of channel catfish, Ictalurus punctatus, female x blue catfish, I. furcatus, male hybrid eggs and fry. Journal of Aquaculture Economics and Management 8:253-268.
  132. Ligeon C, Dunham R, Jolly CJ, Argue B, Liu ZJ, Yant R, Benfrey J, Gagalac F, and Dunham R. (2004). Economics of production of channel catfish, Ictalurus punctatus, female x blue catfish, I. furcatus, male hybrid fingerlings and foodfish. Journal of Aquaculture Economics and Management 8:269-280.
  133. Serapion J, Waldbieser GC, Wolters W, Liu ZJ. (2004). Development of Type I markers in channel catfish through intron sequencing. Animal Genetics 35:463-466.
  134. Liu ZJ, Cordes J. (2004). DNA marker technologies and their applications in aquaculture genetics. Aquaculture 238:1-37.
  135. He C, Peatman E, Baoprasertkul P, Kucuktas H, and Liu ZJ. (2004). Multiple CC chemokines in channel catfish and blue catfish as revealed by analysis of expressed sequence tags. Immunogenetics 56:379-387.
  136. Pridgeon JW, Liu ZJ, and Liu N. (2004). Identification of Mariner Elements from House Flies (Musca domestica) and German Cockroaches (Blattella germanica). Insect Molecular Biology 13:443-447.
  137. Chen L, Jiang H, Zhou Z, Li K, Li K, Deng GY, and Liu ZJ. (2004). Purification of vitellin from the ovary of Chinese mitten-handed crab, Eriocheir sinensis, and development of an anti-vitellin ELISA. Comparative Biochemistry and Physiology B Biochemistry and Molecular Biology 138:305-311.
  138. Karsi A, Waldbieser G, Small B, Liu ZJ, and Wolters W. (2004). Molecular cloning of proopiomelanocortin cDNA and multi-tissue mRNA expression in channel catfish. General and Comparative Endocrinology 137:312-321.
  139. Serapion J, Kucuktas H, Feng J, Liu ZJ. (2004). Bioinformatic Mining of Type I Microsatellites from Expressed Sequence Tags of Channel Catfish (Ictalurus punctatus). Marine Biotechnology 6:364-377.
  140. Peatman E, Wei X, Feng J, Liu L, Kucuktas H, Li L, He C, Rouse D, Wallace R, Dunham R, Liu ZJ. (2004). Development of Expressed Sequence Tags (ESTs) from Eastern Oyster (Crassostrea virginica): Lessons Learned from Previous Efforts. Marine Biotechnology 6: S491-496.
  141. Kocabas A, Dunham R, Liu ZJ. (2004). Alterations in gene expression in the brain of white catfish (Ameirus catus) in response to cold acclimation. Marine Biotechnology 6:S431-438.
  142. Baoprasertkul P, Peatman E, He C, Kucuktas H, Li P, Chen L, Simmons M, and Liu ZJ. (2004). Sequence analysis and expression of a CXC chemokine in resistant and susceptible catfish after infection of Edwardsiella ictaluri. Developmental and Comparative Immunology 28:769-780.
  143. He C, Chen L, Simmons M, Li P, Kim S, and Liu ZJ. (2003). Putative SNP discovery in interspecific hybrids of catfish by comparative EST analysis. Animal Genetics 34:445-448.
  144. Argue B, Liu ZJ, and Dunham RA. (2003). Dress-out and fillet yields of channel catfish, Ictalurus punctatus, blue catfish, I. furcatus, and their F1, F2 and backcross hybrids. Aquaculture 228:81-90.
  145. Liu ZJ. (2003). A review of catfish genomics: progress and perspectives. Comparative and Functional Genomics 4:259-265.
  146. Mickett K, Morton C, Feng J, Li P, Simmons M, Dunham RA, Cao D, and Liu ZJ. (2003). Assessing genetic diversity of domestic populations of channel catfish (Ictalurus punctatus) in Alabama using AFLP markers. Aquaculture 228:91-105.
  147. Liu ZJ, Karsi A, Li P, Cao D, and Dunham R. (2003). An AFLP-based genetic linkage map of channel catfish (Ictalurus punctatus) constructed by using an interspecific hybrid resource family. Genetics 165:687-694.
  148. Patterson A, Karsi A, Feng J, and Liu ZJ. (2003). Translational Machinery of Channel Catfish: II. Complementary DNA and Expression of the Complete Set of 47 60S Ribosomal Proteins. Gene 305:151-160.
  149. Dunham R, Kucuktas H, Liu ZJ, Keefer L, Spencer M. (2002). Biochemical Genetics of Brook Trout in Georgia: Management Implications. Proc. Ann. South. Assoc. Fish Wildl. 55:63-80.
  150. Kocabas A, Li P, Cao D, Karsi A, He C, Patterson A, Ju Z, Dunham R, and Liu ZJ. (2002). Expression profile of the channel catfish spleen: analysis of genes involved in immune functions. Marine Biotechnology 4:526-536.
  151. Ju Z, Dunham R, and Liu ZJ. (2002). Differential gene expression in the brain of channel catfish (Ictalurus punctatus) in response to cold acclimation. Molecular Genetics and Genomics 268:87-95.
  152. Karsi A, Patterson A, Feng J, and Liu ZJ. (2002). Translational machinery of channel catfish: I. A transcriptomic approach to the analysis of 32 40S ribosomal protein genes and their expression. Gene 291:177-186.
  153. Karsi A, Cao D, Li P, Patterson A, Kocabas A, Feng J, Ju Z, Mickett K, and Liu ZJ. (2002). Transcriptome analysis of channel catfish (Ictalurus punctatus): Initial analysis of gene expression and microsatellite-containing cDNAs in the skin. Gene 285:157-168.
  154. Kocabas A, Kucuktas H, Dunham RA, and Liu ZJ. (2002). Molecular characterization and differential expression of the myostatin gene in channel catfish (Ictalurus punctatus). Biochimica et Biophysica Acta 1575:99-107.
  155. Kucuktas H, Wagner BK, Shopen, R, Gibson M, Dunham RA, and Liu ZJ. (2002). Genetic analysis of Ozark hellbenders (Cryptobranchus alleganiensis bishopi) utilizing RAPD markers. Proc. Ann. Conf. SEAFWA 55:126-137.
  156. Liu ZJ, Li P, Kocabas A, Ju Z, Karsi A, Cao D, Patterson A. (2001). Microsatellite-containing genes from the channel catfish brain: evidence of trinucleotide repeat expansion in the coding region of nucleotide excision repair gene RAD23B, Biochemical and Biophysical Research Communications 289:317-324.
  157. Liu ZJ, Kim S, Karsi A. (2001). Channel catfish follicle stimulating hormone and luteinizing hormone: cDNA cloning and their expression during ovulation. Marine Biotechnology 3:590-599.
  158. Liu ZJ, Feng J. (2001). Gene mapping and marker-assisted selection in channel catfish (Ictalurus punctatus). Acta Agriculturae Boreali-Occidentalis Sinica 10:110-114.
  159. Liu ZJ, Kim S, Kucuktas H, and Karsi A. (2001). Multiple isoforms and an unusual cathodic isoform of creatine kinase from channel catfish (Ictalurus punctatus). Gene 275:207-215.
  160. Cao D, Kocabas A, Ju Z, Karsi A, Li P, Patterson A, and Liu ZJ. (2001). Transcriptome of channel catfish (Ictalurus punctatus): initial analysis of genes and expression profiles from the head kidney. Animal Genetics 32:169-188.
  161. Karsi A, Moav B, Hackett P, Liu ZJ. (2001). Effects of insert size on transposition efficiency of the Sleeping Beauty transposon in mouse cells. Marine Biotechnology 3:241-245.
  162. Altinok I, Grizzle J, and Liu ZJ. (2001). Detection of Yersinia ruckeri in rainbow trout blood by use of polymerase chain reaction. Disease of Aquatic Organisms 44:29-34.
  163. Ju Z, Karsi A, Kocabas A, Patterson A, Li P, Cao D, Dunham R, and Liu ZJ. (2000). Transcriptome analysis of channel catfish (Ictalurus punctatus): genes and expression profile from the brain. Gene 261:373-382.
  164. Kim S, Karsi A, Dunham R, Liu ZJ. (2000). The skeletal muscle beta-actin gene of channel catfish (Ictalurus punctatus) and its association with piscine-specific SINE elements. Gene 252:173-181.
  165. Dunham RA, Lambert DM, Argue B J, Ligeon C, Yant R, and Liu ZJ. (2000). Comparison of manual stripping and pen spawning for production of female channel catfish x blue catfish hybrids and aquarium spawning of channel catfish. North American Journal of Aquaculture 62:260-265.
  166. Liu ZJ. (1999). Gene Mapping and marker-assisted selection in channel catfish (Ictalurus punctatus). Proceedings of Sino-US Symposium on Agricultural Biotechnology. pp. 101-112.
  167. Tan G, Karsi A, Li P, Kim S, Zheng X, Kucuktas H, Argue BJ, Dunham RA, and Liu ZJ. (1999). Polymorphic microsatellite markers in Ictalurus punctatus and related catfish species. Molecular Ecology 8:1758-1760.
  168. Liu ZJ, Tan G, Li P, and Dunham RA. (1999). Transcribed dinucleotide microsatellites and their associated genes from channel catfish, Ictalurus punctatus. Biochemical and Biophysical Research Communications 259:190-194.
  169. Liu ZJ. (1999). Gene mapping, marker-assisted selection, gene cloning, genetic engineering, and integrated genetic improvement programs at Auburn University. The Fifth Conference of the International Network on Genetics in Aquaculture Proceedings, Kuala Lumpur, Malaysia. pp. 1-19.
  170. Lambert DM, Argue BJ, Liu ZJ, Dunham RA. (1999). Effects of seasonal variations, thyroid and steroid hormones, and carp pituitary extract on the artificial production of channel catfish (Ictalurus punctatus) X blue catfish (I. furcatus) hybrid embryos. Journal of the world Aquaculture Society 30:80-89.
  171. Liu ZJ, Karsi A, and Dunham RA. (1999). Development of polymorphic EST markers suitable for genetic linkage mapping of catfish. Marine Biotechnology 1:437-447.
  172. Liu ZJ, Tan G, Kucuktas H, Li P, Karsi A, Yant DR, and Dunham RA. (1999). High levels of conservation at microsatellite loci among Ictalurid catfishes. J. Heredity 90:307-312.
  173. Liu ZJ, Li P, Kucuktas H, and Dunham RA. (1999). Characterization of nonautonomous Tc1-like transposable elements of channel catfish (Ictalurus punctatus). Fish Physiology and Biochemistry 21:65-72.
  174. Liu ZJ, Li P, Argue BJ, and Dunham RA. (1999). Random amplified polymorphic DNA markers: usefulness for gene mapping and analysis of genetic variation of catfish. Aquaculture 174:59-68.
  175. Liu ZJ, Li P, Kucuktas H, Nichols A, Tan G, Zheng X, Argue BJ, Yant R, and Dunham RA. (1999). Development of amplified fragment length polymorphism (AFLP) markers suitable for genetic linkage mapping of catfish. Trans. Amer. Fish. Soc. 128:317-327.
  176. Dunham RA., Liu ZJ, and Argue B. (1998). The effect of the absence or presence of channel catfish males on induced ovulation of channel catfish females for artificial fertilization with blue catfish sperm. The Progressive Fish-Culturist 60:297-300.
  177. Karsi A, Li P, Dunham R, and Liu ZJ. (1998). Transcriptional activities in the pituitaries of channel catfish (Ictalurus punctatus) before and after induced ovulation as revealed by expressed sequence tag analysis. Journal of Molecular Endocrinology 21:121-129.
  178. Waldbieser G, Liu ZJ, Wolters W, and Dunham R. (1998). Genetic linkage and QTL mapping of catfish. Proceedings of the National Aquaculture Species Gene Mapping Workshop, 31-38.
  179. Liu ZJ, Li P, Argue B, and Dunham R. (1998). Inheritance of RAPD markers in channel catfish (Ictalurus punctatus), blue catfish (I. furcatus) and their F1, F2 and backcross hybrids. Animal Genetics 29:58-62.
  180. Liu ZJ, Nichols A, Li P, and Dunham R. (1998). Inheritance and usefulness of AFLP markers in channel catfish (Ictalurus punctatus), blue catfish (I. furcatus) and their F1, F2 and backcross hybrids. Molecular and General Genetics 258:260-268.
  181. Liu ZJ, Li P, and Dunham R. (1998). Characterization of an A/T-rich family of sequences from the channel catfish (Ictalurus punctatus). Molecular Marine Biology and Biotechnology 7:232-239.
  182. Liu ZJ, and Dunham R. (1997). Genetic linkage and QTL mapping of ictalurid catfish. Alabama Agricultural Experiment Station Circular Bulletin 321:1-19.
  183. Liu ZJ, Li P, Argue B, and Dunham R. (1997). Gonadotropin alpha-subunit glycoprotein from channel catfish (Ictalurus punctatus) and its expression during hormone-induced ovulation. Molecular Marine Biology & Biotechnology 6:217-227.
  184. Liu ZJ. (1996). Heterostagger cloning: efficient and rapid cloning of PCR products. Nucleic Acids Research 24:2458-2459.
  185. Ghai J, Ostrow R, Tolar J, McGlennen R, Lamke T, Tobolt D, Liu ZJ, and Faras A. (1996). The E5 gene product of rhesus papillomavirus is an activator of endogenous ras and phosphatidylinositol-3'-kinase in NIH 3T3 cells. Proceedings of the National Academy of Sciences USA. 93:12879-12884.
  186. Liu ZJ. (1995). Faithful cloning of PCR products by heterostegger GC vector. NIH Journal 7:78.
  187. Liu ZJ, Ostrow R, and Faras A. (1995). The expression levels of HPV-16 E7 determines the immortalization or transformation phenotypes of BRK cells. Virology 207:260-270.
  188. Ostrow R, Coughlin S, McGlennen R, Liu ZJ, Zelterman D, and Faras A. (1994). Topical CTC-96 accelerates wart growth in rabbits infected with cottontail rabbit papillomavirus. Antiviral Research 24:27-35.
  189. Liu ZJ, Ostrow R, McGlennen R, and Faras A. (1994). The E6 gene of human papillomavirus type 16 is Sufficient for transformation of baby rat kidney cells in cotransfection with activated H-ras. Virology 201:388-396.
  190. Bushnell W, Liu ZJ. (1994). Incompatibibility conditioned by the Mla gene in powdery mildew of barley: Timing of the effect of cordycepin on hypersensitive cell death. Physiological and Molecular Plant Pathology 44:389-402.
  191. Liu ZJ, and Hackett PB. (1993). Reverse Cloning: rapid generation of subclones for DNA sequencing. Methods in Enzymology (Ray Wu ed.) 218:47-58.
  192. Liu ZJ, Szabo L, and Bushnell W. (1993). Molecular cloning and analysis of abundant and stage-specific mRNAs from Puccinia graminis. Molecular Plant-Microbe Interactions 6:84-91.
  193. Ostrow RS, Liu ZJ, Schneider JF, McGlennen RC, Forslund K, and Faras AJ. (1993). The products of the E5, E6, or E7 open reading frames of RhPV 1 can individually transform NIH 3T3 cells or in cotransfections with activated ras can transform primary rodent epithelial cells. Virology 196:861-867.
  194. Gross M, Schneider J, Moav N, Alvarez C, Myster S, Liu ZJ, Hallerman E, Hackett P, Guise K, Faras A, and Kapuscinski A. (1992). Molecular analysis and growth evaluation of northern pike (Esox Iucius) microinjected with growth hormone genes. Aquaculture 103:253-273.
  195. Moav B, Liu ZJ, Faras A, Guise K, Kapuscinski A, and Hackett PB. (1992). Regulation of expression of transgenes in developing fish. Transgenic Research 2:153-161.
  196. Moav B, Liu ZJ, and Hackett P. (1992). Selection of promoters for gene transfer into fish. Molecular Marine Biology and Biotechnology 1:338-345.
  197. Bushnell W, Clark TA, Liu ZJ, Smith AG, Szabo LJ, and Zeyen RJ. (1992). Host response gene expression in powdery mildew of barley. Vortr. Pflanzenzuchtg. 24:48-50.
  198. Liu ZJ, Moav B, Faras A, Guise K, Kapuscinski A, and Hackett P. (1991). Importance of CArG boxes in regulation of the carp beta-actin gene expression. Gene 108:211-216.
  199. Hallerman E, Schneider J, Gross M, Liu ZJ, Yoon SJ, He L, Hackett P, Faras A, Kapuscinski A, and Guise K. (1990). Gene expression promoted by the RSV long terminal repeat element in transgenic goldfish. Animal Biotechnology 1:79-93.
  200. Yoon SJ, Hallerman E, Gross M, Liu ZJ, Schneider J, Faras A, Hackett P, Kapuscinski A, and Guise K. (1990). Transfer of the gene for neomycin resistance into goldfish, Carassius auratus. Aquaculture 85:21-33.
  201. Liu ZJ, Zhu Z, Roberg K, Faras A, Guise K, Kapuscinski A, and Hackett P. (1990). Isolation and characterization of the betaactin gene of carp (Cyprinus carpio). DNA Sequence 1:125-136.
  202. Liu ZJ, Moav B, Faras A, Guise K, Kapuscinski A, and Hackett P. (1990). Functional analysis of elements affecting expression of the beta-actin gene of carp. Molecular and Cellular Biology 10:3432-3440.
  203. Liu ZJ, Moav B, Faras A, Guise K, Kapuscinski A, and Hackett P. (1990). Development of expression vectors for transgenic fish. Nature Biotechnology 8:1268-1272.
  204. Yoon SJ, Liu ZJ, Kapuscinski A, Hackett P, Faras A, and Guise K. (1989). Successful gene transfer in fish. In: UCLA Symposia on Molecular and Cellular Biology and Gene Transfer and Gene Therapy, New series, Vol. 87:29-34.
  205. Yoon SJ, Liu ZJ, Kapuscinski A, Hackett P, Faras A, and Guise K. (1990). Successful gene transfer in fish. 16th US-Japan Natural Resources Panel on Aquaculture Symposium. NOAA Technical Report NMFS 92:39-44.
  206. Liu ZJ, and Hackett P. (1989). Sequence variation of the Rous sarcoma virus PrA src gene. Nucleic Acids Research 17:3986.
  207. Liu ZJ, Zhu Z, Roberg K, Faras A, Guise K, Kapuscinski A, and Hackett P. (1989). The actin gene of carp (Ctenopharyngodon idella). Nucleic Acids Research 17:5850.
  208. Liu ZJ, and Hackett P. (1989). Rapid generation of subclones for DNA sequencing using the reverse cloning procedure. BioTechniques 7:722-728.
  209. Bushnell WR, Mendgen K, and Liu ZJ. (1987). Accumulation of potentiometric and other dyes in haustoria of Erysiphe graminis in living host cells. Physiological and Molecular Plant Pathology 31:237-250.
  210. Liu ZJ, Bushnell WR, and Brambl R. (1987). Potentiometric cyanine dyes are sensitive probes for mitochondria in intact plant cells: kinetin enhances mitochondrial fluorescence. Plant Physiology 84:1385-1390.
  211. Bushnell WR, Liu ZJ, and Mendgen K. (1986). Cyanine potentiometric probes for mitochondria of Erysiphe graminis. Phytopathol. 76:1123.
  212. Liu ZJ, and Bushnell WR. (1986). Effects of cytokinins on fungus development and host response in powdery mildew of barley. Physiological Plant Pathology 29:41-52.
  213. Li J, Bai X, and Liu ZJ. 1982. A preliminary taxonomy of powdery mildew in Shaanxi Province. Northwestern Agricultural University Academic Journal 20

 

Book Chapters

  1. Sun F, Ninwichian P, Liu SK, Liu, ZJ. 2013. Identification and application of sex-specific markers in catfish. In: Sex determination in fishes, ed. Songlin Chen, pp. 131-139, Academic Press, Beijing.
  2. Liu, Z.J. 2011.  Aquaculture Genomics: A Case Study with Catfish.  In: Comprehensive Biotechnology (2nd Edition), Article 293 ‘Aquaculture Genomics’, pp.371-380.
  3. Liu, S, Zhang Y, Sun F, Jiang Y, Wang R, Li C, Zhang J,  Liu ZJ. 2012. Approaches for Functional Genomics in aquaculture. pp. 1-40. In: Functional Genomics in Aquaculture, Wiley and Blackwell Publishing, Ames, IA.
  4. Zhang J, Jiang Y, Wang R, Li C, Zhang Y, Sun F, Liu, S, Liu ZJ. 2012. Chapter 2, Genomic resources for aquaculture functional genomics. pp. 41-77. In: Functional Genomics in Aquaculture, Wiley and Blackwell Publishing, Ames, IA.
  5. Liu ZJ.  2010.  Genomic variations, marker technologies and their usefulness for genome-based selection.  pp. 3-20. In: Next Generation Sequencing, SNPs, and Whole Genome Selection, Wiley and Blackwell Publishing, Ames, IA.
  6. Lu J and Liu ZJ.  2010. Copy number variations (CNV) and whole genome selection.  pp. 21-34. In: Next Generation Sequencing, SNPs, and Whole Genome Selection, Wiley and Blackwell Publishing, Ames, IA.
  7. Kucuktas H and Liu ZJ.  2010.  Construction of libraries for next generation sequencing.  pp. 57-68. In: Next Generation Sequencing, SNPs, and Whole Genome Selection, Wiley and Blackwell Publishing, Ames, IA.
  8. Wang S and Liu ZJ.  2010.  SNP discovery through EST data mining.  pp. 91-108. In: Next Generation Sequencing, SNPs, and Whole Genome Selection, Wiley and Blackwell Publishing, Ames, IA.
  9. Wang S, Liu H, and Liu ZJ. 2010.  SNP quality assessment. pp. 109-122. In: Next Generation Sequencing, SNPs, and Whole Genome Selection, Wiley and Blackwell Publishing, Ames, IA.
  10. Liu, Z.J. 2009.  Genome-based technologies useful for aquaculture research and genetic improvement of aquaculture species.  pp. 3-54. In: New Technologies in Aquaculture (eds. Gavin Burnell and Geoff Allan) Woodhead Publishing, London.
  11. Rise M, Liu ZJ, Douglas SE, Brown LL, Nash JHE, and McFall-Ngai MJ. 2009.  Chapter 4, Aquaculture-related Applications of DNA Microarray Technology. Pp. 63-101, In: Molecular Research in Aquaculture (eds., Overturf and Small). Wiley-Blackwell Publishing, Ames, IA.
  12. Liu ZJ.  2008.  Chapter 3, Catfish.  Pp. 85-100.  In “The Genome: A Series on Genome Mapping, Molecular Breeding & Genomics of Economic Species” (C. Kole, Kocher eds.) Vol. 6, Oxford & IBH and Science Pub. Inc.
  13. Liu ZJ. 2007.  Chapter 1 Concept of genomes and genomics. In: Aquaculture Genome Technologies (edited by Liu ZJ.), pp. 1-10, Blackwell Publishing, Ames, IA.
  14. Liu ZJ. 2007.  Chapter 2 Marking the genome: Restriction fragment length polymorphism (RFLP). In: Aquaculture Genome Technologies (edited by Liu ZJ.), pp. 11-20, Blackwell Publishing, Ames, IA.
  15. Liu ZJ.  2007.  Chapter 3 Random amplified polymorphic DNA (RAPD). In: Aquaculture Genome Technologies (edited by Liu ZJ.), pp. 21-28, Blackwell Publishing, Ames, IA.
  16. Liu ZJ.  2007.  Chapter 4 Amplified fragment length polymorphism (AFLP). In: Aquaculture Genome Technologies (edited by Liu ZJ.), pp. 29-42, Blackwell Publishing, Ames, IA.
  17. Liu ZJ.  2007.  Chapter 5 Microsatellite markers and assessment of marker utility. In: Aquaculture Genome Technologies (edited by Liu ZJ.), pp. 43-58, Blackwell Publishing, Ames, IA.
  18. Liu ZJ.  2007.  Chapter 6 Single nucleotide polymorphism (SNP). In: Aquaculture Genome Technologies (edited by Liu ZJ.), pp. 59-72, Blackwell Publishing, Ames, IA.
  19. Liu ZJ.  2007.  Chapter 7 Allozyme and mitochondrial DNA markers. In: Aquaculture Genome Technologies (edited by Liu ZJ.), pp. 72-86, Blackwell Publishing, Ames, IA.
  20. Xu P, Wang S, and Liu ZJ.  2007.  Chapter 15 Physical characterization through BAC end sequencing. In: Aquaculture Genome Technologies (edited by Liu ZJ.), pp. 263-276, Blackwell Publishing, Ames, IA.
  21. Liu ZJ.  2007.  Chapter 16 Genomescape: characterizing the repeat structure of the genome. In: Aquaculture Genome Technologies (edited by Liu ZJ.), pp. 277-290, Blackwell Publishing, Ames, IA.
  22. Liu ZJ.  2007.  Chapter 20 Transcriptome characterization through the analysis of expressed sequence tags. In: Aquaculture Genome Technologies (edited by Liu ZJ.), pp. 301-356, Blackwell Publishing, Ames, IA.
  23. Peatman E, and Liu ZJ.  2007.  Chapter 21 Microarray fundamentals: Basic principles and application in aquaculture. In: Aquaculture Genome Technologies (edited by Liu ZJ.), pp. 357-370, Blackwell Publishing, Ames, IA.
  24. Liu ZJ.  2007.  Chapter 25 DNA sequencing technologies. In: Aquaculture Genome Technologies (edited by Liu ZJ.), pp. 465-476, Blackwell Publishing, Ames, IA.
  25. Liu ZJ.  2007.  Chapter 26 Sequencing the genome. In: Aquaculture Genome Technologies (edited by Liu ZJ.), pp. 477-490, Blackwell Publishing, Ames, IA.
  26. Liu ZJ.  2007.  Fish genomics and genetic analytical technologies, with examples of their potential applications in management of fish genetic resources.  Policy paper for FAO’s Commission on Genetic Resources for Food and Agriculture.  In: Workshop on Status and Trends in Aquatic Genetic Resources---A basis for international policy, FAO Fisheries Proceedings 5 (eds. Devin Bartley, Brian Harvey, Roger Pullin), FAO, Rome, pp. 145-179.
  27. Liu ZJ, Peatman E. 2006.  Chemokines in fish: a rapidly expanding repertoire.  pp. 121-144. In Focus on Immunology Research, (Editor, Barbara A. Veskler), Nova Science Publishers, Inc., New York.
  28. Liu ZJ.  2005.  Genetic Analysis-Amplified Fragment Length Polymorphism (AFLP), Chapter 19, In: Stock Identification Methods, Steve Cadrin, Keven D. Friedland, John Waldman, (eds.), Elsevier Press, New York, pp.389-411.
  29. Liu ZJ, and Jensen JW.  2003. Aquaculture has great expectations of the genome revolution.  Pp. 50-52.  In: Celebration of the 50 Years of DNA, A Commemorative Book for the discovery of the DNA structure by Francis Crick and James Watson (eds. T. John, Foreword by Tony Blair), Cambridge.
  30. Dunham R, and Liu ZJ.  2003.  Gene mapping, isolation and genetic improvement in catfish. In N.Shimizu, T Aoki, I. Hirono and F. Takashima (eds.) Aquatic Genomics: Steps Toward a Great Future. Springer-Verlag, New York pp. 45-60.
  31. Moav B, and Liu ZJ, Moav N, Faras A, Guise K, Kapuscinski A, and Hackett P. 1991.  Expression of heterologous genes in transgenic fish.  In: Transgenic Fish (Hew C., ed.) World Scientific Pub. Co. 121-140.
  32. Dunham RA, Liu ZJ, Wolters W, Waldbieser G, Tiersch TR. and Winn R.   1998.  Summary of catfish mapping group. Proceedings of the National Aquaculture Species Gene Mapping Workshop. Northeastern Regional Aquaculture Center Publication No. NRAC 98-001.pp. 66-67.
  33. Dunham RA, Majumdar K, Hallerman E, Hulata G, Gjedrem T, Mair G, Bartley D, Gupta M, Liu ZJ, Pongthana N, Rothlisberg P, and Horstweeg-Schwark G.  2001.  Review of the status of aquaculture genetics.  In: R.P. Subasinghe, P. Bueno, M.J. Phillips, C. Hough, S.E. McGladdery, and J.R. Arthur, eds. Aquaculture in the Third Millenium.  Technical Proceedings of the Conference on Aquaculture in the Third Millenium Pp. 137-166.  NACA, Bangkok and FAO, Rome. 
  34. Liu ZJ.  2001.  Gene mapping, marker-assisted selection, gene cloning, genetic engineering, and integrated genetic improvement programs at Auburn University.  In: Fish Genetics Research in Member Countries and Institutions of the International Network on Genetics in Aquaculture, ed. M.V. Gupta &B.O. Acosta, ICLARM Conf. Proc. 64:109-118.
  35. Dunham R, Majumdar K, Hallerman E, Hulata G, Gjedrem T, Mair G, Bartley D, Gupta M, and Liu ZJ. 2000.  Aquaculture Genetics in the Third Millennium.  In: Book of Synopses, International Conference on Aquaculture in the Third Millennium, pp.139-144.

 

 

 

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